XB-FEAT-483692: Difference between revisions
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=''pax8''= | =''pax8''= | ||
This is the community wiki page for the gene ''pax8'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase | This is the community wiki page for the gene ''pax8'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase. | ||
=reagents for ''pax8''= | =reagents for ''pax8''= | ||
good probe is genbank AF179301 [http://www.ncbi.nlm.nih.gov/nucleotide/5815456?], in bluescript SK-, cut with BamHI and transcribe with T7. Amp resistant. [http://www.xenbase.org/literature/article.do?method=display&articleId=12317] | good probe is genbank AF179301 [http://www.ncbi.nlm.nih.gov/nucleotide/5815456?], in bluescript SK-, cut with BamHI and transcribe with T7. Amp resistant. [http://www.xenbase.org/literature/article.do?method=display&articleId=12317] | ||
=synteny= | |||
<div style="overflow-x: scroll"> | |||
{| class="wikitable" | |||
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!Species!!Chromosome!!< 5!!< 4!!< 3!!< 2!!< 1!!Gene of Interest!!> 1!!> 2 !!> 3!!> 4!!> 5 | |||
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|X.tropicalis||chr3||rnf181||tmem150a||c3h2orf68||usp39||sftpb||GeneID:780226;pax8;||psd4||LOC116409784||LOC116409785||fndc3c1l||il1b | |||
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|X.laevis||chr3S||LOC121402131.S||ckap2l-like.S||il1b.S||LOC108712739.S||psd4.S||GeneID:108712742;pax8.S;||sftpb.S||usp39.S||c2orf68.S||tmem150a.S||rnf181.S | |||
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|X.laevis||chr3L||vamp8.L||tmem150a.L||c3h2orf68.L||usp39.L||sftpb.L||GeneID:398132;pax8.L;||psd4.L||LOC108711576.L||il1b.L||LOC108711579.L||nt5dc4.L | |||
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Latest revision as of 08:14, 30 May 2024
pax8
This is the community wiki page for the gene pax8 please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase.
reagents for pax8
good probe is genbank AF179301 [1], in bluescript SK-, cut with BamHI and transcribe with T7. Amp resistant. [2]
synteny
| Species | Chromosome | < 5 | < 4 | < 3 | < 2 | < 1 | Gene of Interest | > 1 | > 2 | > 3 | > 4 | > 5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| X.tropicalis | chr3 | rnf181 | tmem150a | c3h2orf68 | usp39 | sftpb | GeneID:780226;pax8; | psd4 | LOC116409784 | LOC116409785 | fndc3c1l | il1b |
| X.laevis | chr3S | LOC121402131.S | ckap2l-like.S | il1b.S | LOC108712739.S | psd4.S | GeneID:108712742;pax8.S; | sftpb.S | usp39.S | c2orf68.S | tmem150a.S | rnf181.S |
| X.laevis | chr3L | vamp8.L | tmem150a.L | c3h2orf68.L | usp39.L | sftpb.L | GeneID:398132;pax8.L; | psd4.L | LOC108711576.L | il1b.L | LOC108711579.L | nt5dc4.L |