Full Length Clones: Difference between revisions
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(Created page with "{| class="wikitable" |+ Resource files |- |- ! Code !! Date !! Project !! Data File !! Description |- | Xt3.1 || October 2003 || '''Full Length Project'''. ''Xenopus tropicali...") |
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! Code !! Date !! Project !! Data | ! Code !! Date !! Project !! Data Files !! Description | ||
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| Xt3.1 || October 2003 || '''Full Length Project'''. ''Xenopus tropicalis'', ~200,000 Egg, Gastrula, Neurula, Tadpole ESTs from Wellcome/Sanger EST Project. || Full length clone list in FASTA format | | Xt3.1 || October 2003 || '''Full Length Project'''. ''Xenopus tropicalis'', ~200,000 Egg, Gastrula, Neurula, Tadpole ESTs from Wellcome/Sanger EST Project. || [[File:Xt-FL-2-sequences.fa.txt|in FASTA format]] : Full length clone list in FASTA format <br> [[File:Xt-FL-2-clone-map.txt |with plate co-ordinates]] : Full length clone list with plate co-ordinates, TAB delimited txt file || Putative full length clones with consensus sequence if from a cluster, or 5' EST sequence if a singleton. Includes FL confidence score (0-100). | ||
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| Xt4.1 || November 2003 || '''Oligo Design Project'''. ''Xenopus tropicalis'', ~300,000 ESTs: Xt3 + all publicly available + ~50,000 from N. Pollet.|| Oligo design source sequences || TAB delimited file containing Qiagen oligo ID, oligo plate/well coordinates, type of sequence, Wellcome identifier, sequence. | | Xt4.1 || November 2003 || '''Oligo Design Project'''. ''Xenopus tropicalis'', ~300,000 ESTs: Xt3 + all publicly available + ~50,000 from N. Pollet.|| [[File:Xt4-oligo-design-sequences.txt|Oligo design source sequences]] : Oligo design source sequences || TAB delimited file containing Qiagen oligo ID, oligo plate/well coordinates, type of sequence, Wellcome identifier, sequence. | ||
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Latest revision as of 14:50, 6 October 2022
| Code | Date | Project | Data Files | Description |
|---|---|---|---|---|
| Xt3.1 | October 2003 | Full Length Project. Xenopus tropicalis, ~200,000 Egg, Gastrula, Neurula, Tadpole ESTs from Wellcome/Sanger EST Project. | File:Xt-FL-2-sequences.fa.txt : Full length clone list in FASTA format File:Xt-FL-2-clone-map.txt : Full length clone list with plate co-ordinates, TAB delimited txt file |
Putative full length clones with consensus sequence if from a cluster, or 5' EST sequence if a singleton. Includes FL confidence score (0-100). |
| Xt4.1 | November 2003 | Oligo Design Project. Xenopus tropicalis, ~300,000 ESTs: Xt3 + all publicly available + ~50,000 from N. Pollet. | File:Xt4-oligo-design-sequences.txt : Oligo design source sequences | TAB delimited file containing Qiagen oligo ID, oligo plate/well coordinates, type of sequence, Wellcome identifier, sequence. |