XB-FEAT-12565273 and XB-FEAT-6485520: Difference between pages
imported>Xenbase (Created page with "=nomenclature changes= 10.23.2018 Human symbol has changed for genepage ID: 12565273 From sgk494 to rskr Human symbol has changed for Entrez Gene: 124923. From SGK494 to RSK...") |
imported>Xenbase (Created page with "=nomenclature changes= November 1st, 2018. The orthology and homology of the bix gene family (brachyury-inducible homeobox genes) has been reassessed. Following nomenclature...") |
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=nomenclature changes= | =nomenclature changes= | ||
November 1st, 2018. | |||
The orthology and homology of the bix gene family (brachyury-inducible homeobox genes) has been reassessed. Following nomenclature guidelines, the following changes have been made to the naming system for the Xenopus bix genes. | |||
Previously, only bix1-bix4 were named, and with latest genome annotation, it was clear that the first 3 loci are tandem duplication of the same orthologue, and as such should be named bix1, genes 1, 2 and 3. In addition, X. tropicalis has 3 additional bix genes, before acbd3. These bix genes are named in order, from left to right, bix1 genes 4, 5 and 6. The earlier names are now recorded as synonyms on the Xenbase gene pages. | |||
The order of the genes ( and flanking genes) on chromosome 5 for X. tropicalis, X. laevis .L and X. laevis.S are shown below. (# indicates newly annotated bix gene; < and > symbols indicate directionality). | |||
previous annotation: | |||
X. tropicalis: lin9>; mixer>; mix1>; <bix#: bix#>; bix#>; bix#>; bix#>; bix#>; acbd3> | |||
X. laevis . L: lin9>; mixer>; mix1>; <'''bix3'''; bix#>; '''bix1'''>; acbd3> | |||
X. laevis . S: lin9>; mixer>; mix1>; <bix#; '''bix2'''>; '''bix4'''>; acbd3> | |||
new nomenclature | |||
X. tropicalis: lin9>; mixer>; mix1>; <bix1.1: bix1.2> ; bix1.3>; bix1.4>; bix1.5>; bix1.6>; acbd3> | |||
X. laevis . L: lin9>; mixer>; mix1>; <bix1.1; bix1.2>; bix1.3>; acbd3> | |||
X. laevis . S: lin9>; mixer>; mix1>; <bix1.1; bix1.2>; bix1.3>; acbd3> | |||
synonyms: | |||
'''bix3''' is now bix1.1 | |||
'''bix2''' is now bix1.2 | |||
'''bix1''' and '''bix4''' are now bix 1.3 | |||
Revision as of 07:00, 1 November 2018
nomenclature changes
November 1st, 2018.
The orthology and homology of the bix gene family (brachyury-inducible homeobox genes) has been reassessed. Following nomenclature guidelines, the following changes have been made to the naming system for the Xenopus bix genes.
Previously, only bix1-bix4 were named, and with latest genome annotation, it was clear that the first 3 loci are tandem duplication of the same orthologue, and as such should be named bix1, genes 1, 2 and 3. In addition, X. tropicalis has 3 additional bix genes, before acbd3. These bix genes are named in order, from left to right, bix1 genes 4, 5 and 6. The earlier names are now recorded as synonyms on the Xenbase gene pages.
The order of the genes ( and flanking genes) on chromosome 5 for X. tropicalis, X. laevis .L and X. laevis.S are shown below. (# indicates newly annotated bix gene; < and > symbols indicate directionality).
previous annotation:
X. tropicalis: lin9>; mixer>; mix1>; <bix#: bix#>; bix#>; bix#>; bix#>; bix#>; acbd3>
X. laevis . L: lin9>; mixer>; mix1>; <bix3; bix#>; bix1>; acbd3>
X. laevis . S: lin9>; mixer>; mix1>; <bix#; bix2>; bix4>; acbd3>
new nomenclature
X. tropicalis: lin9>; mixer>; mix1>; <bix1.1: bix1.2> ; bix1.3>; bix1.4>; bix1.5>; bix1.6>; acbd3>
X. laevis . L: lin9>; mixer>; mix1>; <bix1.1; bix1.2>; bix1.3>; acbd3>
X. laevis . S: lin9>; mixer>; mix1>; <bix1.1; bix1.2>; bix1.3>; acbd3>
synonyms:
bix3 is now bix1.1
bix2 is now bix1.2
bix1 and bix4 are now bix 1.3