imported>Virgilio |
imported>Xenbase anatomy generator |
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| *'''''Books for Xenopus Research and Protocols'''''
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| **'''Normal Table of Xenopus Laevis (Daudin)''', Nieuwkoop and Faber (Third edition), 1994 [http://www.xenbase.org/literature/book.do?method=display&bookId=1]
| | This is the community wiki page for the ''glomerus'' please feel free to add any information that is relevant to this anatomy item that is not already captured elsewhere in Xenbase |
| ***a systematic and chronological description of Xenopus laevis development
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| **'''Early Development of Xenopus laevis: A Laboratory Manual''', Sive, Grainger, and Harland, 2000 [http://www.xenbase.org/literature/book.do?method=display&bookId=22]
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| ***comprehensive collection of protocols for the study of early development in Xenopus embryos
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| **'''The Laboratory Xenopus sp.''', Green, 2010 [http://www.xenbase.org/literature/book.do?method=display&bookId=222]
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| ***a highly detailed manual containing Xenopus husbandry, management, veterinary care, and frog and equipment vendor information
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| **'''Xenopus Protocols: Cell Biology and Signal Transduction''', Liu (First edition), 2006 [http://www.xenbase.org/literature/book.do?method=display&bookId=206]
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| ***step-by-step laboratory instructions, an introduction outlining the principles behind the technique, lists of the necessary equipment and reagents
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| **'''Xenopus laevis: Practical Uses in Cell and Molecular Biology, Volume 36''', Kay and Peng, 1991 [http://www.xenbase.org/literature/book.do?method=display&bookId=204]
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| ***detailed description of a wide range of uses for Xenopus laevis oocytes and embryos in cell and molecular biology
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| **'''Transgenic Xenopus: Microinjection Methods and Developmental Neurobiology''', Seidman and Soreq, 1997 [http://www.xenbase.org/literature/book.do?method=display&bookId=203]
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| ***referenced guide to the use of microinjected embryos studying the role and regulation of nervous system proteins during development
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| **'''Atlas of Xenopus Development''', Bernardini, Prati, Bonetti, and Scari, 1999 [http://www.xenbase.org/literature/book.do?method=display&bookId=202]
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| ***scanning, transmission, and light microscopy images of Xenopus embryonic development
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| **'''The early development of Xenopus laevis. An atlas of the histology''', Hausen and Riebesell, 1991 [http://www.xenbase.org/literature/book.do?method=display&bookId=124]
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| ***detailed histological sections of Xenopus embryonic development
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| **'''Color Atlas of Xenopus laevis Histology''', Wiechmann and Wirsig-Wiechmann, 2003 [http://www.xenbase.org/literature/book.do?method=display&bookId=82]
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| ***central source on the microscopic anatomy of cells, tissues, and major organs of Xenopus laevis
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| *'''''Online Resources for Xenopus Research and Protocols'''''
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| **'''Cold Spring Harbor Protocols - Xenopus''' [http://cshprotocols.cshlp.org/search?fulltext=Xenopus&submit=yes&x=18&y=12&tocsectionid=protocol&tocsectionid=recipe&tocsectionid=topic+introduction&tocsectionid=emerging+model+organisms&tocsectionid=product+protocol&tocsectionid=kit&tocsectionid=information+panel], subscription required
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| **'''The Journal of Visualized Experiments (JOVE) - Xenopus embryo''' [http://www.jove.com/keyword/xenopus+embryo]
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| ***Production of Transgenic Xenopus laevis by Restriction Enzyme Mediated Integration and Nuclear Transplantation - Enrique Amaya & Kristen Kroll [http://www.jove.com/video/2010/production-transgenic-xenopus-laevis-restriction-enzyme-mediated]
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| ***Tissue Determination Using the Animal Cap Transplant (ACT) Assay in Xenopus laevis - Andrea S. Viczian & Michael E. Zuber [http://www.jove.com/video/1932/tissue-determination-using-animal-cap-transplant-act-assay-xenopus]
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| ***Blastomere Explants to Test for Cell Fate Commitment During Embryonic Development - Paaqua A. Grant, Mona B. Herold & Sally A. Moody [http://www.jove.com/video/4458/blastomere-explants-to-test-for-cell-fate-commitment-during-embryonic]
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| ***Neural Explant Cultures from Xenopus laevis - Laura Anne Lowery, Anna E.R. Faris, Alina Stout & David Van Vactor [http://www.jove.com/video/4232/neural-explant-cultures-from-xenopus-laevis]
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| ***Polarized Translocation of Fluorescent Proteins in Xenopus Ectoderm in Response to Wnt Signaling - Keiji Itoh & Sergei Y. Sokol [http://www.jove.com/video/2700/polarized-translocation-fluorescent-proteins-xenopus-ectoderm]
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| ***Production of Xenopus tropicalis Egg Extracts to Identify Microtubule-associated RNAs - Judith A. Sharp & Mike D. Blower [http://www.jove.com/video/50434/production-xenopus-tropicalis-egg-extracts-to-identify-microtubule]
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| ***Electroporation of Craniofacial Mesenchyme - Jacqueline M. Tabler & Karen J. Liu [http://www.jove.com/video/3381/electroporation-of-craniofacial-mesenchyme]
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| ***Simultaneous Pre- and Post-synaptic Electrophysiological Recording from Xenopus Nerve-muscle Co-cultures - Bruce Yazejian, Rita M. Yazejian, Rachel Einarsson & Alan D. Grinnell [http://www.jove.com/video/50253/simultaneous-pre-post-synaptic-electrophysiological-recording-from]
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| ***Dissection, Culture, and Analysis of Xenopus laevis Embryonic Retinal Tissue - Molly J. McDonough, Chelsea E. Allen, Ng-Kwet-Leok A. Ng-Sui-Hing, Brian A. Rabe, Brittany B. Lewis & Margaret S. Saha [http://www.jove.com/video/4377/dissection-culture-analysis-xenopus-laevis-embryonic-retinal]
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| ***Live-cell Imaging and Quantitative Analysis of Embryonic Epithelial Cells in Xenopus laevis - Sagar D. Joshi & Lance A. Davidson [http://www.jove.com/video/1949/live-cell-imaging-quantitative-analysis-embryonic-epithelial-cells]
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| ***Plastic Embedding and Sectioning of Xenopus laevis Embryos - Souichi Ogata1, Shimako Kawauchi, Anne Calof & Ken W.Y. Cho [http://www.jove.com/video/188/plastic-embedding-and-sectioning-of-xenopus-laevis-embryos]
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| ***Dissection of Organizer and Animal Pole Explants from Xenopus laevis Embryos and Assembly of a Cell Adhesion Assay - Souichi Ogata & Ken W.Y. Cho [http://www.jove.com/video/187/dissection-organizer-animal-pole-explants-from-xenopus-laevis-embryos]
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| ***Fertilization of Xenopus oocytes using the Host Transfer Method - Patricia N. Schneider, Alissa M. Hulstrand & Douglas W. Houston [http://www.jove.com/video/1864/fertilization-of-xenopus-oocytes-using-the-host-transfer-method]
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| ***Microinjection of Xenopus Laevis Oocytes - Sarah Cohen, Shelly Au & Nelly Panté - [http://www.jove.com/video/1106/microinjection-of-xenopus-laevis-oocytes]
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| ***Comparative in vivo Study of gp96 Adjuvanticity in the Frog Xenopus laevis - Hristina Nedelkovska, Tanya Cruz-Luna, Pamela McPherson & Jacques Robert [http://www.jove.com/video/2026/comparative-vivo-study-gp96-adjuvanticity-frog-xenopus]
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| ***Two Types of Assays for Detecting Frog Sperm Chemoattraction - Lindsey A. Burnett, Nathan Tholl & Douglas E. Chandler [http://www.jove.com/video/3407/two-types-of-assays-for-detecting-frog-sperm-chemoattraction]
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| ***Study of the DNA Damage Checkpoint using Xenopus Egg Extracts - Jeremy Willis, Darla DeStephanis, Yogin Patel, Vrushab Gowda & Shan Yan [http://www.jove.com/video/4449/study-of-the-dna-damage-checkpoint-using-xenopus-egg-extracts]
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| ***Patch Clamp Recording of Ion Channels Expressed in Xenopus Oocytes - Austin L Brown, Brandon E. Johnson & Miriam B. Goodman [http://www.jove.com/video/936/patch-clamp-recording-of-ion-channels-expressed-in-xenopus-oocytes]
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| ***Measuring Cation Transport by Na,K- and H,K-ATPase in Xenopus Oocytes by Atomic Absorption Spectrophotometry: An Alternative to Radioisotope Assays - Katharina L. Dürr, Neslihan N. Tavraz, Susan Spiller & Thomas Friedrich [http://www.jove.com/video/50201/measuring-cation-transport-nak-hk-atpase-xenopus-oocytes-atomic]
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| ***Preparation and Fractionation of Xenopus laevis Egg Extracts - Marie K. Cross & Maureen Powers [http://www.jove.com/video/891/preparation-and-fractionation-of-xenopus-laevis-egg-extracts]
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| ***Obtaining Eggs from Xenopus laevis Females - Marie K. Cross & Maureen Powers [http://www.jove.com/video/890/obtaining-eggs-from-xenopus-laevis-females]
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| ***In Vitro Nuclear Assembly Using Fractionated Xenopus Egg Extracts - Marie Cross & Maureen Powers [http://www.jove.com/video/908/in-vitro-nuclear-assembly-using-fractionated-xenopus-egg-extracts]
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| ***Patch Clamp and Perfusion Techniques for Studying Ion Channels Expressed in Xenopus oocytes - Junqiu Yang, Kelli Delaloye, Urvi S. Lee & Jianmin Cui [http://www.jove.com/video/2269/patch-clamp-perfusion-techniques-for-studying-ion-channels-expressed]
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| ***Visualizing RNA Localization in Xenopus Oocytes - James A. Gagnon & Kimberly L. Mowry [http://www.jove.com/video/1704/visualizing-rna-localization-in-xenopus-oocytes]
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| ***Single Cell Electroporation in vivo within the Intact Developing Brain - D. Sesath Hewapathirane & Kurt Haas - [http://www.jove.com/video/705/single-cell-electroporation-in-vivo-within-the-intact-developing-brain]
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| *'''''Animal Husbandry'''''
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| **obtain frogs and frog housing equipment [http://www.xenbase.org/other/obtain.do]
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| **Xenopus Express links [http://www.xenopus.com/links.htm] - Xenopus Express husbandry [http://www.xenopus.com/husbandry.htm]
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| **[[Xenopus tropicalis and Xenopus laevis environmental parameter standard operating procedure (Kroll lab)]]
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| *'''''[[Lab Solutions and Reagents]]''''' - click to view expanded list
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| **[[culture media]]
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| **[[immunohistochemistry]]
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| **[[in situ hybridization]]
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| **[[fixatives]]
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| **[[DNA/RNA preparation]]
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| **[[embryo manipulation/dissection]]
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| **[[microinjection]]
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| **[[general buffers and salt solutions]]
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| *'''''Generating Embryos'''''
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| **[[inducing egg laying via hCG injection (Vize lab)]]
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| **[[anesthesia, in vitro fertilization, and natural mating of Xenopus tropicalis (Conlon lab)]]
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| **[[benzocaine stock, 100x (Khokha lab)]]
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| **[[in vitro fertilization of Xenopus laevis (Conlon lab)]]
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| **[[high-salt solution for egg laying (Zorn lab/Ron Laskey)]]
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| **[[dejellying embryos (Sive et al. 2000)]]
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| **[[dejellying embryos (Zorn lab)]]
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| *'''''Transgenics'''''
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| **[[transgenesis in Xenopus laevis - adapted from Amaya et al 2001 (Conlon lab)]]
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| **[[tadpole tail sampling for genomic DNA (Conlon lab)]]
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| **''Production of transgenic Xenopus laevis by restriction enzyme mediated integration and nuclear transplantation.'' Amaya E, Kroll K. J Vis Exp. 2010 Aug 21;(42). [http://www.jove.com/video/2010/production-of-transgenic-xenopus-laevis-by-restriction-enzyme-mediated-integration-and-nuclear-transplantation]
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| **''A method for generating transgenic frog embryos.'' Ishibashi S, Kroll KL, Amaya E. Methods Mol Biol. 2008;461:447-66. [http://www.springerlink.com/content/vn5v1470g87620t1/#section=96225&page=1]
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| **''A method for generating transgenic frog embryos.'' Amaya E, Kroll KL. Methods Mol Biol. 1999;97:393-414. [http://www.springerlink.com/content/vn5v1470g87620t1/#section=96225&page=1]
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| *'''''In Situ Hybridization'''''
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| **[[in situ hybridization, brief version (Harland lab)]]
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| **[[whole-mount in situ hybridization (Conlon lab)]]
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| ***[[in situ checklist (Conlon lab)]]
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| **[[fluorescent in-situs and FCIS (Vize lab)]]
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| ***[[Wholemount embryo FISH / Double FISH]]
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| ***[[Flourescin Tyramide Synthesis]]
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| ***[[Cy3 Tyramide Synthesis]]
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| ***[[FCIS]]
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| *'''''Immunohisochemistry'''''
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| **[[wholemount antibody staining (CSH Protocols) (Wallingford lab)]]
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| **[[wholemount antibody staining - alkaline phosphatase detection (Conlon lab)]]
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| **[[wholemount antibody staining - adapted from Dan Weeks' protocol (Conlon lab)]]
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| **[[immunostaining sectioned embryos (Conlon lab)]]
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| **[[hydrochloric acid antigen retrieval (Zorn lab)]]
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| *'''''Histology'''''
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| **[[cryosectioning Xenopus embryos (Conlon lab)]]
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| *'''''Other Embryo Staining Protocols'''''
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| **[[benzidine-peroxidase staining for blood (Conlon lab)]]
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| **[[benzidine-peroxidase staining for blood (Thomsen lab)]]
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| **[[apoptosis via TUNEL (Veenstra lab)]]
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| **[[TUNEL staining of whole Xenopus embryos - Harland protocol (Conlon lab)]]
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| *'''''Other Immuno Protocols and Protein Protocols'''''
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| **[[immunoprecipitation (Stukenberg lab)]]
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| **[[immunofluorescence with biotinylated antibodies (Stukenberg lab)]]
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| **Purifying Polyclonal Antibodies using Affinity Columns/Chromatography
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| ***[[Making an Affinity Column]]
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| ***[[Running an Affinity Column]]
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| **[[whole embryo protein extraction with freon (Conlon lab)]]
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| **[[SDS-PAGE gels (Conlon lab)]]
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| **[[western blot protocol (Conlon lab)]]
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| **[[silver staining protein gels (Stukenberg lab)]]
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| *'''''Nucleic Acid Protocols'''''
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| **RNA Isolation
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| ***[[Preparation of RNA Using Proteinase K/LiCl (Sive et al. 2000)]]
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| ***[[Preparation of RNA (In Vitro Transcription) (Sive et al. 2000)]]
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| **DNA Isolation
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| ***[[Extraction of DNA from Single Embryos (Sive et al. 2000)]]
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| ***[[Isolation of DNA from Red Blood Cells (Sive et al. 2000)]]
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| *'''''[[Oocyte Transfer Technique (Heasman/Wylie labs)]]'''''
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| **[[Part 1: Choosing Oligodeoxyribonucleotides (ODNs)]]
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| **[[Part 2: ODN Modification]]
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| **[[Part 3: Host Transfer Technique]]
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| **[[Part 4: Fertilization and Development]]
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| *'''''Xenopus Oocyte and Egg Extracts'''''
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| **[[crude interphase egg extract (Shechter lab)]]
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| **[[isolation of chromatin from egg extract and histone recovery (Shechter lab)]]
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| **[[preparation of cycling egg extract (Shechter lab)]]
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| **[[cycling extracts, mike's protocol (Stukenberg lab)]]
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| **[[cycling extracts, sara's protocol (Stukenberg lab)]]
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| **[[CSF extract, mike's protocol (Stukenberg lab)]]
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| **[[CSF extract, sara's protocol (Stukenberg lab)]]
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| **[[assaying H1 kinase in extracts (Stukenberg lab)]]
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| *'''''Xenopus Tissue Culture'''''
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| **[[tissue culture of Xenopus cell lines S3, XTC (Stukenberg lab)]]
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| **[[isolation of mitotic chromosomes from XTC cells (Stukenberg lab)]]
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| **[[in-vitro kinetochore-microtubule binding assays (Stukenberg lab)]]
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