https://wiki.xenbase.org/xenwiki/index.php?title=Protocols&feed=atom&action=history
Protocols - Revision history
2024-03-29T02:12:38Z
Revision history for this page on the wiki
MediaWiki 1.40.1
https://wiki.xenbase.org/xenwiki/index.php?title=Protocols&diff=51810&oldid=prev
Xenbase: /* Protocols published in non-CSHL Journals and from Xenopus labs -click to view- */
2024-01-18T20:11:41Z
<p><span dir="auto"><span class="autocomment">Protocols published in non-CSHL Journals and from Xenopus labs -click to view-</span></span></p>
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 14:11, 18 January 2024</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=='''Protocols published in non-CSHL Journals and from ''Xenopus'' labs -click to view-'''==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=='''Protocols published in non-CSHL Journals and from ''Xenopus'' labs -click to view-'''==</div></td></tr>
<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">==='''''Xenopus Sperm cryopreservation'''''===</ins></div></td></tr>
<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">**'''Transitioning from a research protocol to a scalable applied pathway for Xenopus laevis sperm cryopreservation at a national stock center: The effect of cryoprotectants'''. Lucía Arregui, Jack C. Koch, Terrence R. Tiersch. 2023. JEZ-B molecular and Developmental Evolution[https://doi.org/10.1002/jez.b.23228]</ins></div></td></tr>
<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">**'''Cryopreservation of sperm of Xenopus laevis and Xenopus tropicalis''' Michael G. Sargent, Timothy J. Mohun. 2005, Genesis [https://doi.org/10.1002/gene.20092]</ins></div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=== '''''Genotyping, Genome & DNA damage/repair''''' ===</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=== '''''Genotyping, Genome & DNA damage/repair''''' ===</div></td></tr>
</table>
Xenbase
https://wiki.xenbase.org/xenwiki/index.php?title=Protocols&diff=51809&oldid=prev
Xenbase: /* RNA solubility, RNA interference (RNAi) */
2024-01-16T16:02:47Z
<p><span dir="auto"><span class="autocomment">RNA solubility, RNA interference (RNAi)</span></span></p>
<table style="background-color: #fff; color: #202122;" data-mw="interface">
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 10:02, 16 January 2024</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l100">Line 100:</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>**'''Optimized design of antisense oligomers for targeted rRNA depletion'''. Wesley Phelps, Anne Carlson and Miler Lee. 2021. Nucleic Acids Res January 1, 2021; 49 (1): e5. [[https://academic.oup.com/nar/article/49/1/e5/5998392]] The Oligo-ASST Web tool is available at The Oligo-ASST Web tool is available at https://mtleelab.pitt.edu/oligo. Source code for the Web application and a command-line version of the program are available at https://github.com/MTLeeLab/oligo-asst.</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>**'''Optimized design of antisense oligomers for targeted rRNA depletion'''. Wesley Phelps, Anne Carlson and Miler Lee. 2021. Nucleic Acids Res January 1, 2021; 49 (1): e5. [[https://academic.oup.com/nar/article/49/1/e5/5998392]] The Oligo-ASST Web tool is available at The Oligo-ASST Web tool is available at https://mtleelab.pitt.edu/oligo. Source code for the Web application and a command-line version of the program are available at https://github.com/MTLeeLab/oligo-asst.</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>===RNA solubility, RNA interference (RNAi)===</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>===RNA solubility, RNA interference (RNAi)===</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>**'''A fractionation-based protocol to investigate RNA solubility phase transition during Xenopus oocyte maturation'''. Hyojeong Hwang, Meng Ma, Jing Yang 2024. STAR protocols. (OA in Cell Press- download PDF here: https://www.sciencedirect.com/science/article/pii/S2666166723007979?via%3Dihub)</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>**'''A fractionation-based protocol to investigate RNA solubility phase transition during Xenopus oocyte maturation'''. Hyojeong Hwang, Meng Ma, Jing Yang 2024. STAR protocols. <ins style="font-weight: bold; text-decoration: none;">https://doi.org/10.1016/j.xpro.2023.102830 </ins>(OA in Cell Press- download PDF here: https://www.sciencedirect.com/science/article/pii/S2666166723007979?via%3Dihub)</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> </div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> </div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>**'''Application of the RNA interference technique to Xenopus embryos: Specific reduction of the β-catenin gene products by short double-stranded RNA produced by recombinant human Dicer''' Yuta Tagami, Takeshi Nishiyama, Michiko Omote, and Minoru Watanabe. 2021. Dev Growth Differ November 24, 2021;[https://onlinelibrary.wiley.com/doi/10.1111/dgd.12762]</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>**'''Application of the RNA interference technique to Xenopus embryos: Specific reduction of the β-catenin gene products by short double-stranded RNA produced by recombinant human Dicer''' Yuta Tagami, Takeshi Nishiyama, Michiko Omote, and Minoru Watanabe. 2021. Dev Growth Differ November 24, 2021;[https://onlinelibrary.wiley.com/doi/10.1111/dgd.12762]</div></td></tr>
</table>
Xenbase
https://wiki.xenbase.org/xenwiki/index.php?title=Protocols&diff=51808&oldid=prev
Xenbase: /* RNA interference (RNAi) */
2024-01-16T16:01:57Z
<p><span dir="auto"><span class="autocomment">RNA interference (RNAi)</span></span></p>
<table style="background-color: #fff; color: #202122;" data-mw="interface">
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 10:01, 16 January 2024</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l99">Line 99:</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>** '''Protocol for RNaseH-mediated RNA depletion''', see Supplemental file from "Optimized design of antisense oligomers for targeted rRNA depletion" by Wesley A. Phelps, Anne E. Carlson, Miler T. Lee, 2020. Nucleic Acids Research, gkaa1072, [[https://doi.org/10.1093/nar/gkaa1072]]</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>** '''Protocol for RNaseH-mediated RNA depletion''', see Supplemental file from "Optimized design of antisense oligomers for targeted rRNA depletion" by Wesley A. Phelps, Anne E. Carlson, Miler T. Lee, 2020. Nucleic Acids Research, gkaa1072, [[https://doi.org/10.1093/nar/gkaa1072]]</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>**'''Optimized design of antisense oligomers for targeted rRNA depletion'''. Wesley Phelps, Anne Carlson and Miler Lee. 2021. Nucleic Acids Res January 1, 2021; 49 (1): e5. [[https://academic.oup.com/nar/article/49/1/e5/5998392]] The Oligo-ASST Web tool is available at The Oligo-ASST Web tool is available at https://mtleelab.pitt.edu/oligo. Source code for the Web application and a command-line version of the program are available at https://github.com/MTLeeLab/oligo-asst.</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>**'''Optimized design of antisense oligomers for targeted rRNA depletion'''. Wesley Phelps, Anne Carlson and Miler Lee. 2021. Nucleic Acids Res January 1, 2021; 49 (1): e5. [[https://academic.oup.com/nar/article/49/1/e5/5998392]] The Oligo-ASST Web tool is available at The Oligo-ASST Web tool is available at https://mtleelab.pitt.edu/oligo. Source code for the Web application and a command-line version of the program are available at https://github.com/MTLeeLab/oligo-asst.</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>===RNA interference (RNAi)===</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>===<ins style="font-weight: bold; text-decoration: none;">RNA solubility, </ins>RNA interference (RNAi)===</div></td></tr>
<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">**'''A fractionation-based protocol to investigate RNA solubility phase transition during Xenopus oocyte maturation'''. Hyojeong Hwang, Meng Ma, Jing Yang 2024. STAR protocols. (OA in Cell Press- download PDF here: https://www.sciencedirect.com/science/article/pii/S2666166723007979?via%3Dihub)</ins></div></td></tr>
<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"> </ins></div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>**'''Application of the RNA interference technique to Xenopus embryos: Specific reduction of the β-catenin gene products by short double-stranded RNA produced by recombinant human Dicer''' Yuta Tagami, Takeshi Nishiyama, Michiko Omote, and Minoru Watanabe. 2021. Dev Growth Differ November 24, 2021;[https://onlinelibrary.wiley.com/doi/10.1111/dgd.12762]</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>**'''Application of the RNA interference technique to Xenopus embryos: Specific reduction of the β-catenin gene products by short double-stranded RNA produced by recombinant human Dicer''' Yuta Tagami, Takeshi Nishiyama, Michiko Omote, and Minoru Watanabe. 2021. Dev Growth Differ November 24, 2021;[https://onlinelibrary.wiley.com/doi/10.1111/dgd.12762]</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
</table>
Xenbase
https://wiki.xenbase.org/xenwiki/index.php?title=Protocols&diff=51807&oldid=prev
Xenbase: /* Xenopus Protocols and Video Demostrations: Online Resources */
2024-01-16T15:58:11Z
<p><span dir="auto"><span class="autocomment">Xenopus Protocols and Video Demostrations: Online Resources</span></span></p>
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 09:58, 16 January 2024</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>**Reconstitution Of β-catenin Degradation In Xenopus Egg Extract. Chen et al. 2020. [https://www.jove.com/video/51425/reconstitution-of-catenin-degradation-in-xenopus-egg-extract]</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>**Reconstitution Of β-catenin Degradation In Xenopus Egg Extract. Chen et al. 2020. [https://www.jove.com/video/51425/reconstitution-of-catenin-degradation-in-xenopus-egg-extract]</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>**<del style="font-weight: bold; text-decoration: none;">'''NEW''' </del>''Xenopus laevis'' Egg Extract Preparation and Live Imaging Methods for Visualizing Dynamic Cytoplasmic Organization. Xianrui Cheng and James Farrell. 2021. [https://www.jove.com/t/61923/xenopus-laevis-egg-extract-preparation-live-imaging-methods-for]</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>** ''Xenopus laevis'' Egg Extract Preparation and Live Imaging Methods for Visualizing Dynamic Cytoplasmic Organization. Xianrui Cheng and James Farrell. 2021. [https://www.jove.com/t/61923/xenopus-laevis-egg-extract-preparation-live-imaging-methods-for]</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=='''Protocols published in non-CSHL Journals and from ''Xenopus'' labs -click to view-'''==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=='''Protocols published in non-CSHL Journals and from ''Xenopus'' labs -click to view-'''==</div></td></tr>
</table>
Xenbase
https://wiki.xenbase.org/xenwiki/index.php?title=Protocols&diff=51316&oldid=prev
Christina: /* Xenopus oocyte cell free extract */
2023-07-11T21:48:03Z
<p><span dir="auto"><span class="autocomment">Xenopus oocyte cell free extract</span></span></p>
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 15:48, 11 July 2023</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>**'''Microfluidic encapsulation of ''Xenopus laevis'' cell-free extracts using hydrogel photolithography.''' Zachary Geisterfer, John Oakey, Jesse Gatlin. 2020. STAR Protocols Volume 1, Issue 3, 18 December 2020, 100221 [[https://www.sciencedirect.com/science/article/pii/S2666166720302082?via%3Dihub]]</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>**'''Microfluidic encapsulation of ''Xenopus laevis'' cell-free extracts using hydrogel photolithography.''' Zachary Geisterfer, John Oakey, Jesse Gatlin. 2020. STAR Protocols Volume 1, Issue 3, 18 December 2020, 100221 [[https://www.sciencedirect.com/science/article/pii/S2666166720302082?via%3Dihub]]</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>**''''Affinity Purification of Label-free Tubulins from ''Xenopus'' Egg Extracts''''. Sebastian Reusch, Abin Biswas, William Graham Hirst, SimoneReber. 2020. STAR Protocols Volume 1, Issue 3, 18 December 2020, 100151. [[https://www.sciencedirect.com/science/article/pii/S2666166720301386?via%3Dihub]]</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>**''''Affinity Purification of Label-free Tubulins from ''Xenopus'' Egg Extracts''''. Sebastian Reusch, Abin Biswas, William Graham Hirst, SimoneReber. 2020. STAR Protocols Volume 1, Issue 3, 18 December 2020, 100151. [[https://www.sciencedirect.com/science/article/pii/S2666166720301386?via%3Dihub]]</div></td></tr>
<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">** '''Multi-purpose yolk-depleted embryo extracts.'''['''a freon-free protocol'''] Veenstra GJ, Destrée OH, Wolffe AP. Translation of maternal TATA-binding protein mRNA potentiates basal but not activated transcription in ''Xenopus'' embryos at the midblastula transition. Mol Cell Biol. 1999 Dec;19(12):7972-82. [[doi: 10.1128/MCB.19.12.7972]]. PMID: 10567523; PMCID: PMC84882.</ins></div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=== '''''Xenopus oocyte expression system''''' ===</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=== '''''Xenopus oocyte expression system''''' ===</div></td></tr>
</table>
Christina
https://wiki.xenbase.org/xenwiki/index.php?title=Protocols&diff=51315&oldid=prev
Christina: /* Protocols published in non-CSHL Journals- click to view- */
2023-07-11T21:43:33Z
<p><span dir="auto"><span class="autocomment">Protocols published in non-CSHL Journals- click to view-</span></span></p>
<table style="background-color: #fff; color: #202122;" data-mw="interface">
<col class="diff-marker" />
<col class="diff-content" />
<col class="diff-marker" />
<col class="diff-content" />
<tr class="diff-title" lang="en">
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 15:43, 11 July 2023</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l69">Line 69:</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>**'''NEW''' ''Xenopus laevis'' Egg Extract Preparation and Live Imaging Methods for Visualizing Dynamic Cytoplasmic Organization. Xianrui Cheng and James Farrell. 2021. [https://www.jove.com/t/61923/xenopus-laevis-egg-extract-preparation-live-imaging-methods-for]</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>**'''NEW''' ''Xenopus laevis'' Egg Extract Preparation and Live Imaging Methods for Visualizing Dynamic Cytoplasmic Organization. Xianrui Cheng and James Farrell. 2021. [https://www.jove.com/t/61923/xenopus-laevis-egg-extract-preparation-live-imaging-methods-for]</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>=='''Protocols published in non-CSHL Journals- click to view-'''==</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>=='''Protocols published in non-CSHL Journals <ins style="font-weight: bold; text-decoration: none;">and from ''Xenopus'' labs </ins>-click to view-'''==</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=== '''''Genotyping, Genome & DNA damage/repair''''' ===</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=== '''''Genotyping, Genome & DNA damage/repair''''' ===</div></td></tr>
</table>
Christina
https://wiki.xenbase.org/xenwiki/index.php?title=Protocols&diff=436&oldid=prev
imported>Xenbase: /* Gene knock out/knock down and Gene Editing */
2021-12-01T18:33:25Z
<p><span dir="auto"><span class="autocomment">Gene knock out/knock down and Gene Editing</span></span></p>
<table style="background-color: #fff; color: #202122;" data-mw="interface">
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 12:33, 1 December 2021</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>** '''Protocol for RNaseH-mediated RNA depletion''', see Supplemental file from "Optimized design of antisense oligomers for targeted rRNA depletion" by Wesley A. Phelps, Anne E. Carlson, Miler T. Lee, 2020. Nucleic Acids Research, gkaa1072, [[https://doi.org/10.1093/nar/gkaa1072]]</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>** '''Protocol for RNaseH-mediated RNA depletion''', see Supplemental file from "Optimized design of antisense oligomers for targeted rRNA depletion" by Wesley A. Phelps, Anne E. Carlson, Miler T. Lee, 2020. Nucleic Acids Research, gkaa1072, [[https://doi.org/10.1093/nar/gkaa1072]]</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>**'''Optimized design of antisense oligomers for targeted rRNA depletion'''. Wesley Phelps, Anne Carlson and Miler Lee. 2021. Nucleic Acids Res January 1, 2021; 49 (1): e5. [[https://academic.oup.com/nar/article/49/1/e5/5998392]] The Oligo-ASST Web tool is available at The Oligo-ASST Web tool is available at https://mtleelab.pitt.edu/oligo. Source code for the Web application and a command-line version of the program are available at https://github.com/MTLeeLab/oligo-asst.</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>**'''Optimized design of antisense oligomers for targeted rRNA depletion'''. Wesley Phelps, Anne Carlson and Miler Lee. 2021. Nucleic Acids Res January 1, 2021; 49 (1): e5. [[https://academic.oup.com/nar/article/49/1/e5/5998392]] The Oligo-ASST Web tool is available at The Oligo-ASST Web tool is available at https://mtleelab.pitt.edu/oligo. Source code for the Web application and a command-line version of the program are available at https://github.com/MTLeeLab/oligo-asst.</div></td></tr>
<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">===RNA interference (RNAi)===</ins></div></td></tr>
<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">**'''Application of the RNA interference technique to Xenopus embryos: Specific reduction of the β-catenin gene products by short double-stranded RNA produced by recombinant human Dicer''' Yuta Tagami, Takeshi Nishiyama, Michiko Omote, and Minoru Watanabe. 2021. Dev Growth Differ November 24, 2021;[https://onlinelibrary.wiley.com/doi/10.1111/dgd.12762]</ins></div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=== '''''MassSpec & Proteomics''''' ===</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=== '''''MassSpec & Proteomics''''' ===</div></td></tr>
</table>
imported>Xenbase
https://wiki.xenbase.org/xenwiki/index.php?title=Protocols&diff=435&oldid=prev
imported>Xenbase: /* Protocols published in non-CSHL Journals- click to view- */
2021-12-01T18:31:39Z
<p><span dir="auto"><span class="autocomment">Protocols published in non-CSHL Journals- click to view-</span></span></p>
<table style="background-color: #fff; color: #202122;" data-mw="interface">
<col class="diff-marker" />
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<col class="diff-content" />
<tr class="diff-title" lang="en">
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 12:31, 1 December 2021</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l69">Line 69:</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>**'''NEW''' ''Xenopus laevis'' Egg Extract Preparation and Live Imaging Methods for Visualizing Dynamic Cytoplasmic Organization. Xianrui Cheng and James Farrell. 2021. [https://www.jove.com/t/61923/xenopus-laevis-egg-extract-preparation-live-imaging-methods-for]</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>**'''NEW''' ''Xenopus laevis'' Egg Extract Preparation and Live Imaging Methods for Visualizing Dynamic Cytoplasmic Organization. Xianrui Cheng and James Farrell. 2021. [https://www.jove.com/t/61923/xenopus-laevis-egg-extract-preparation-live-imaging-methods-for]</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">=</del>=='''Protocols published in non-CSHL Journals- click to view-'''==<del style="font-weight: bold; text-decoration: none;">=</del></div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>=='''Protocols published in non-CSHL Journals- click to view-'''==</div></td></tr>
<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div> </div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=== '''''Genotyping, Genome & DNA damage/repair''''' ===</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=== '''''Genotyping, Genome & DNA damage/repair''''' ===</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>** '''Sex determination in ''Xenopus laevis'' via RT-PCR.''' Amin Eimanifar, John Aufderheide, Suzanne Z. Schneider, Henry Krueger, and Sean Gallagher 2019. "Development of an in vitro diagnostic method to determine the genotypic sex of Xenopus laevis". PeerJ January 1, 2019; 7 e6886. [[https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6500372/]]</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>** '''Sex determination in ''Xenopus laevis'' via RT-PCR.''' Amin Eimanifar, John Aufderheide, Suzanne Z. Schneider, Henry Krueger, and Sean Gallagher 2019. "Development of an in vitro diagnostic method to determine the genotypic sex of Xenopus laevis". PeerJ January 1, 2019; 7 e6886. [[https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6500372/]]</div></td></tr>
</table>
imported>Xenbase
https://wiki.xenbase.org/xenwiki/index.php?title=Protocols&diff=434&oldid=prev
imported>Xenbase: /* Imaging */
2021-11-26T15:02:44Z
<p><span dir="auto"><span class="autocomment">Imaging</span></span></p>
<table style="background-color: #fff; color: #202122;" data-mw="interface">
<col class="diff-marker" />
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<col class="diff-marker" />
<col class="diff-content" />
<tr class="diff-title" lang="en">
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 09:02, 26 November 2021</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>**INTACT Proteomics in ''Xenopus''. Lauren Wasson, Nirav M. Amin, and Frank L. Conlon. 2019. [http://cshprotocols.cshlp.org/content/2019/6/pdb.prot098384.full?sid=67e6a6db-ab83-4e4e-9b7e-ec7d5fb9974b]</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>**INTACT Proteomics in ''Xenopus''. Lauren Wasson, Nirav M. Amin, and Frank L. Conlon. 2019. [http://cshprotocols.cshlp.org/content/2019/6/pdb.prot098384.full?sid=67e6a6db-ab83-4e4e-9b7e-ec7d5fb9974b]</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=== '''''Imaging''''' ===</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=== '''''Imaging''''' ===</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>**Xenopus Tadpole Craniocardiac Imaging Using Optical Coherence Tomography. Engin Deniz, Emily K Mis, Maura Lane and Mustafa K Khokha. 2021. [http://cshprotocols.cshlp.org/content/early/2021/05/24/pdb.prot105676.long]</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>**<ins style="font-weight: bold; text-decoration: none;">''</ins>Xenopus<ins style="font-weight: bold; text-decoration: none;">'' </ins>Tadpole Craniocardiac Imaging Using Optical Coherence Tomography. Engin Deniz, Emily K Mis, Maura Lane and Mustafa K Khokha. 2021. [http://cshprotocols.cshlp.org/content/early/2021/05/24/pdb.prot105676.long]</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>**Live Imaging of Cytoskeletal Dynamics in Embryonic ''Xenopus laevis'' Growth Cones and Neural Crest Cells. Burcu Erdogan, Elizabeth Bearce, Laura Anne Lowery. 2020. [http://cshprotocols.cshlp.org/content/2021/4/pdb.prot104463.long]</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>**Live Imaging of Cytoskeletal Dynamics in Embryonic ''Xenopus laevis'' Growth Cones and Neural Crest Cells. Burcu Erdogan, Elizabeth Bearce, Laura Anne Lowery. 2020. [http://cshprotocols.cshlp.org/content/2021/4/pdb.prot104463.long]</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>**Imaging Methods in "Xenopus Cells<del style="font-weight: bold; text-decoration: none;">"</del>, Embryos, and Tadpoles. Lance A Davidson and Laura Anne Lowery. 2021. [http://cshprotocols.cshlp.org/content/early/2021/07/08/pdb.top105627.long]</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>**Imaging Methods in "Xenopus<ins style="font-weight: bold; text-decoration: none;">" </ins>Cells, Embryos, and Tadpoles. Lance A Davidson and Laura Anne Lowery. 2021. [http://cshprotocols.cshlp.org/content/early/2021/07/08/pdb.top105627.long]</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>**Imaging Structural and Functional Dynamics in Xenopus Neurons. Hollis Cline. 2021 [http://cshprotocols.cshlp.org/content/early/2021/09/16/pdb.top106773.long]</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>**Imaging Structural and Functional Dynamics in <ins style="font-weight: bold; text-decoration: none;">''</ins>Xenopus<ins style="font-weight: bold; text-decoration: none;">'' </ins>Neurons. Hollis Cline. 2021 [http://cshprotocols.cshlp.org/content/early/2021/09/16/pdb.top106773.long]</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=== '''''Genomes, Chromosomes, DNA, Chromatin and Epigenetics''''' ===</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=== '''''Genomes, Chromosomes, DNA, Chromatin and Epigenetics''''' ===</div></td></tr>
</table>
imported>Xenbase
https://wiki.xenbase.org/xenwiki/index.php?title=Protocols&diff=433&oldid=prev
imported>Xenbase: /* General Research Protocols */
2021-11-26T15:02:04Z
<p><span dir="auto"><span class="autocomment">General Research Protocols</span></span></p>
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 09:02, 26 November 2021</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>**Isolation and Analysis of ''Xenopus'' Germinal Vesicles. Garry T. Morgan. 2018. [http://cshprotocols.cshlp.org/content/2018/4/pdb.prot096958.full?sid=c828398a-2644-45a4-84d8-c438d0645c1c]</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>**Isolation and Analysis of ''Xenopus'' Germinal Vesicles. Garry T. Morgan. 2018. [http://cshprotocols.cshlp.org/content/2018/4/pdb.prot096958.full?sid=c828398a-2644-45a4-84d8-c438d0645c1c]</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>**''Xenopus'' Tadpole Tissue Harvest. Matthew D. Patmann, Leena H. Shewade, Katelin A. Schneider, and Daniel R. Buchholz. 2017 [http://cshprotocols.cshlp.org/content/2017/11/pdb.prot097675.full?sid=2def726a-9d33-480f-960a-2cb505467e1d].</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>**''Xenopus'' Tadpole Tissue Harvest. Matthew D. Patmann, Leena H. Shewade, Katelin A. Schneider, and Daniel R. Buchholz. 2017 [http://cshprotocols.cshlp.org/content/2017/11/pdb.prot097675.full?sid=2def726a-9d33-480f-960a-2cb505467e1d].</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>**''In Vivo'' Transfection of Naked DNA into Xenopus Tadpole Tail Muscle. Lindsey Marshall, Fabrice Girardot, Barbara A. Demeneix, and Laurent Coen. 2017. [http://cshprotocols.cshlp.org/content/2017/11/pdb.prot099366.full?sid=2def726a-9d33-480f-960a-2cb505467e1d]</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>**''In Vivo'' Transfection of Naked DNA into <ins style="font-weight: bold; text-decoration: none;">''</ins>Xenopus<ins style="font-weight: bold; text-decoration: none;">'' </ins>Tadpole Tail Muscle. Lindsey Marshall, Fabrice Girardot, Barbara A. Demeneix, and Laurent Coen. 2017. [http://cshprotocols.cshlp.org/content/2017/11/pdb.prot099366.full?sid=2def726a-9d33-480f-960a-2cb505467e1d]</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>**Cell Proliferation Analysis during Xenopus Metamorphosis: Using 5-Ethynyl-2-Deoxyuridine (EdU) to Stain Proliferating Intestinal Cells. Morihiro Okada and Yun-Bo Shi. 2017. [http://cshprotocols.cshlp.org/content/2017/9/pdb.prot097717.full?sid=05542338-2fde-46e3-a781-f1e82664d1de]</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>**Cell Proliferation Analysis during <ins style="font-weight: bold; text-decoration: none;">''</ins>Xenopus<ins style="font-weight: bold; text-decoration: none;">'' </ins>Metamorphosis: Using 5-Ethynyl-2-Deoxyuridine (EdU) to Stain Proliferating Intestinal Cells. Morihiro Okada and Yun-Bo Shi. 2017. [http://cshprotocols.cshlp.org/content/2017/9/pdb.prot097717.full?sid=05542338-2fde-46e3-a781-f1e82664d1de]</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=== '''''Genome Editing Protocols''''' ===</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=== '''''Genome Editing Protocols''''' ===</div></td></tr>
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imported>Xenbase