CSF Extract (2) and Small Molecules for Xenopus Research: Difference between pages
(Difference between pages)
imported>Virgilio (moved CSF Extract (2) to Stukenberg Lab - Sara's CSF extract: added lab attribution) |
imported>Xenbase |
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==Notice to our users== | |||
Please help us to improve this small molecules wiki and our other wikis by registering for a wiki account through our normal feedback email. | |||
==Important small molecule references== | |||
*[http://www.xenbase.org/literature/article.do?method=display&articleId=35021 Database of Small Molecules by Feldman and Hogue 2006] at [https://pubchem.ncbi.nlm.nih.gov/ PubChem] | |||
*[http://www.xenbase.org/literature/article.do?method=display&articleId=47903 Wnt/Notch by Myers and Krieg 2014] | |||
*[http://www.xenbase.org/literature/article.do?method=display&articleId=970 Ubiquitin-proteasome by Salic and King 2005] | |||
==Alphabetical List of Small Molecules With Literature References== | |||
*[[1,3-Dicyclohexylurea]] | |||
*[[11-cis retinal]] | |||
*[[18alpha-glycyrretinic acid]] | |||
*[[2'-deoxyadenosine]] | |||
*[[2-APB]] | |||
*[[3,3,5-triiodothyronine (T3)]] | |||
*[[5HT (seratonin)]] | |||
*[[8-Pcpt-2-O-Me-cAMP-AM]] | |||
*[[activin]] | |||
*[[AG1296]] | |||
*[[AG1879]] | |||
*[[AGN193109]] | |||
*[[alpha-amanitin]] | |||
*[[anandamide]] | |||
*[[apelin]] | |||
*[[aphidicolin]] | |||
*[[AZD1480]] | |||
*[[Bafilomycin A1]] | |||
*[[BAPTA-AM]] | |||
*[[Barasertib]] | |||
*[[Benzaldehyde, 3-allyl-2-(2-(diethylamino)ethoxy)-(DEAB)]] | |||
*[[beta-xyloside]] | |||
*[[blebbistatin]] | |||
*[[BMS-453]] | |||
*[[Brefeldin A (BFA)]] | |||
*[[bumetanide]] | |||
*[[calcium ionophore]] | |||
*[[CGP54626 ]] | |||
*[[Chelerythrine]] | |||
*[[chenodeoxycholic acid]] | |||
*[[chymostatin ]] | |||
*[[Citral]] | |||
*[[Colcemide]] | |||
*[[concanamycin]] | |||
*[[cycloheximide]] | |||
*[[cyclopamine]] | |||
*[[Cyclosporin A]] | |||
*[[Cytochalasin B]] | |||
*[[cytochalasin D]] | |||
*[[D-AP5]] | |||
*[[D-NAME]] | |||
*[[Colcemide|Demecolcine]] | |||
*[[deltamethrin]] | |||
*[[dexamethosone]] | |||
*[[DHT(dihydrotestosterone)]] | |||
*[[diazepam]] | |||
*[[Difopein]] | |||
*[[Diphenyleneiodonium Chloride]] | |||
*[[DMH-1]] | |||
*[[Dorsomorphin]] | |||
*[[DRB]] | |||
*[[Ex-527]] | |||
*[[finasteride]] | |||
*[[folic acid]] | |||
*[[forskolin]] | |||
*[[fusicoccin]] | |||
*[[gallein]] | |||
*[[gentamycin]] | |||
*[[GSK3-inhibitor IX (BIO)]] | |||
*[[GM6001]] | |||
*[[H-89 Dihydrochloride]] | |||
*[[heptanol]] | |||
*[[herbimycin A]] | |||
*[[Hydroxyurea]] | |||
*[[IBMX]] | |||
*[[jasplakinolide]] | |||
*[[6-B345TTQ]] | |||
*[[KT 5720]] | |||
*[[L-NAME]] | |||
*[[lansoprazole]] | |||
*[[latrunculin A]] | |||
*[[latrunculin B]] | |||
*[[LDN-193189]] | |||
*[[leucovorin]] | |||
*[[LiCl]] | |||
*[[LY294002]] | |||
*[[m-3M3FBS]] | |||
*[[methotrexate (MTX)]] | |||
*[[metronidazole]] | |||
*[[Mg132]] | |||
*[[MMP-2 inhibitor II]] | |||
*[[MS-275]] | |||
*[[nicorandil]] | |||
*[[Nicotinamide]] | |||
*[[Nicotinic acid]] | |||
*[[nifedipine]] | |||
*[[nocodazole]] | |||
*[[NSC-87877]] | |||
*[[o-phenanthroline]] | |||
*[[okadaic acid]] | |||
*[[olomoucine]] | |||
*[[ouabain]] | |||
*[[PD173074]] | |||
*[[PD-407824]] | |||
*[[p-MPPI]] | |||
*[[taxol|Paclitaxel]] | |||
*[[phaclofen]] | |||
*[[Picropodophyllin]] | |||
*[[PMA]] | |||
*[[PP2]] | |||
*[[primaquine]] | |||
*[[Progesterone]] | |||
*[[propylthiouracil]] | |||
*[[pyrimethamine]] | |||
*[[quinpirole]] | |||
*[[rac1 inhibitor]] | |||
*[[rapamycin]] | |||
*[[retinoic acid]] | |||
*[[Retinol]] | |||
*[[RO-3306]] | |||
*[[RS67333]] | |||
*[[RU486]] | |||
*[[SAHA]] | |||
*[[SB 203580]] | |||
*[[SB431542]] | |||
*[[SB 505124]] | |||
*[[SCH28080]] | |||
*[[SNAP]] | |||
*[[sodium nitroprusside]] | |||
*[[SP600125 ]] | |||
*[[SU5402]] | |||
*[[SU6656]] | |||
*[[Suramin]] | |||
*[[tautomycin]] | |||
*[[taxol]] | |||
*[[thyroxine (T4)]] | |||
*[[Torin 2]] | |||
*[[Trichostatin A]] | |||
*[[trimetrexate]] | |||
*[[TTNPB]] | |||
*[[Tubercidin]] | |||
*[[tunicamycin]] | |||
*[[Tyrphostin AG 1478]] | |||
*[[U73122]] | |||
*[[Y27632]] | |||
*[[ZM 447439]] | |||
The Following are in need of standardization and curation | |||
*[[AM251]] | |||
*[[AM281]] | |||
*[[AP1510]] | |||
*[[AR-A014418]] | |||
*[[BHQ]] | |||
*[[b-aminoproprionitrile]] | |||
*[[beclomethasone]] | |||
*[[Butyrate]] | |||
*[[calcicludine]] | |||
*[[Calyculin A]] | |||
*[[celastrol]] | |||
*[[celecoxib]] | |||
*[[chromanol 293B]] | |||
*[[chlorate]] | |||
*[[cytochalasin D]] | |||
*[[colchicine]] | |||
*[[dimethyloxallyl glycine (DMOG)]] | |||
*[[diclofenac]] | |||
*[[etoposide]] | |||
*[[IWR1]] | |||
*[[GW843682X]] | |||
*[[leptomycin B]] | |||
*[[LY320135]] | |||
*[[methylcellulose (MC)]] | |||
*[[methimazole]] | |||
*[[MBCD or MBetaCD]] | |||
*[[MS222]] | |||
*[[nicardipine]] | |||
*[[Nu6102]] | |||
*[[phenylthiourea|phenylthiourea (PTU)]] | |||
*[[purmorphamine]] | |||
*[[Pyrazoleanthrone]] | |||
*[[R(+)BayK 8644]] | |||
*[[RHC80267]] | |||
*[[RL-3]] | |||
*[[SAG]] | |||
*[[SB-431542]] | |||
*[[TG003]] | |||
*[[Thapsigargin]] | |||
*[[U0126]] | |||
*[[ursodeoxycholic acid]] | |||
*[[Echinomycin]] | |||
*[[Gö 6983]] | |||
*[[phenylhydrazine]] | |||
*[[ω-conotoxin–GVIA]] | |||
*[[flunarizine]] | |||
*[[tetrodotoxin]] | |||
*[[veratridine]] | |||
*[[NBI-27914]] | |||
==Small Molecules Affecting Pathways== | |||
===cAMP=== | |||
*[[IBMX]] | |||
*[[RU486]] | |||
===CDK/Cyclins=== | |||
*[[olomoucine]] | |||
*[[RO-3306]] | |||
===ERK/MAPK=== | |||
*[[U0126]] | |||
===Folic Acid=== | |||
*[[Methotrexate (MTX)]] | |||
===JAK/STAT=== | |||
*[[AZD1480]] | |||
===JNK=== | |||
*[[SP600125]] | |||
*[[Pyrazoleanthrone]] | |||
===Nitric Oxide=== | |||
*[[sodium nitroprusside]] | |||
===PDGF=== | |||
*[[AG1296]] | |||
*[[AP1510]] | |||
===Retinoic Acid=== | |||
*[[AGN193109]] | |||
*[[Citral]] | |||
*[[retinoic acid]] | |||
*[[Retinol]] | |||
*[[TTNPB]] | |||
*[[BMS-453]] | |||
===Shh=== | |||
*[[cyclopamine]] | |||
*[[purmorphamine]] | |||
*[[Vismodegib]] | |||
===TGF-beta/BMP=== | |||
*[[SB-431542]] | |||
*[[SB505124]] | |||
===Thyroid Signaling=== | |||
*[[PTU]] | |||
===Wnt=== | |||
*[[LiCl]] | |||
*[[GSK3-inhibitor IX (BIO)]] | |||
*[[IWR1]] | |||
===Epigenetics=== | |||
*[[Ex-527]] | |||
===Protease Inhibitors=== | |||
*[[chymostatin]] | |||
*[[GM6001|GM6001 (MMP inhibitor)]] | |||
*[[o-phenanthroline|o-phenanthroline(MMP inhibitor)]] | |||
*[[BB-94|BB-94 MMP inhibitor]] | |||
*[[GI254023X| GI254023X MMP10 inhibitor]] | |||
==Small Molecules affecting Biological Functions & Processes== | |||
===Angiogenesis=== | |||
*[[dimethyloxallyl glycine (DMOG)]] | |||
*[[herbimycin A]] | |||
*[[Suramin]] | |||
===Apoptosis=== | |||
*[[cycloheximide]] | |||
*[[alpha-amanitin]] | |||
*[[Cyclosporin A]] | |||
*[[2,2ʹ-Methylenebis(1,3-cyclohexanedione)]] | |||
*[[NS3694]] | |||
===Autophagy=== | |||
*[[LY-294002]] | |||
===Calcium Signaling=== | |||
*[[nifedipine]] | |||
*[[R(+)BayK 8644]] | |||
*[[nicardipine]] | |||
*[[deltamethrin]] | |||
*[[BHQ]] | |||
*[[Thapsigargin]] | |||
===Circadian Rhythm=== | |||
*[[quinpirole]] | |||
===Cytoskeletal Inhibitors=== | |||
*[[Cytochalasin B]] | |||
*[[cytochalasin D]] | |||
*[[Colcemide]] | |||
*[[jasplakinolide]] is an activator | |||
*[[latrunculin B]] | |||
*[[taxol]] | |||
*[[taxol|Paclitaxel]] | |||
===Cell Cycle, including mitosis=== | |||
*[[Colcemide]] | |||
*[[Hydroxyurea]] | |||
*[[olomoucine]] | |||
*[[PD-407824]] | |||
===Cilia=== | |||
*[[methylcellulose (MC)]] | |||
===DNA Damage/Repair=== | |||
*[[etoposide]] | |||
*[[Hydroxyurea]] | |||
===DNA Synthesis=== | |||
*[[Calyculin A]] | |||
===Growth Cone, Filopodia, and other Cytoskeletal projections=== | |||
*[[PP2]] | |||
*[[SU6656]] | |||
*[[cytochalasin D]] 0.1 uM Sigma | |||
*[[latrunculin B]] 30nM Sigma | |||
*[[colchicine]] 12.5uM Sigma | |||
*[[nocodazole]] 0.1uM Sigma | |||
*[[RHC80267]] | |||
===Hatching=== | |||
*[[ouabain]] | |||
===Left-Right Patterning=== | |||
*[[methylcellulose (MC)]] | |||
===Metamorphosis=== | |||
*[[3,3,5-triiodothyronine (T3)]] | |||
*[[methimazole]] | |||
*[[propylthiouracil]] | |||
*[[thyroxine (T4)]] | |||
===Neurotransmission=== | |||
*[[diazepam]] | |||
*[[p-MPPI]] | |||
*[[phaclofen]] | |||
*[[RS67333]] | |||
*[[deltamethrin]] | |||
===Protein Recycling=== | |||
*[[primaquine]] | |||
==Drugs by Gene Class== | |||
===Channels, including ATPases=== | |||
*[[ouabain]] | |||
*[[AM251]] | |||
*[[AM281]] | |||
*[[LY320135]] | |||
===G Protein Receptors=== | |||
*[[purmorphamine]] | |||
===Kinases=== | |||
*[[KT 5720]] | |||
*[[olomoucine]] | |||
*[[PD-407824]] | |||
*[[SB 203580]] | |||
*[[Y27632]] | |||
*[[ZM 447439]] | |||
===Phosphatases=== | |||
*[[Cyclosporin A]] | |||
*[[deltamethrin]] | |||
*[[okadaic acid]] | |||
*[[tautomycin]] | |||
*[[Calyculin A]] | |||
===Small GTPases=== | |||
===Protein Synthesis=== | |||
*[[anisomycin]] 40uM Sigma | |||
*[[cycloheximide]] 40uM | |||
===Retinoids=== | |||
*[[TTNPB]] Sigma | |||
==Textpresso Small Molecules to Research== | |||
*[http://www.xenbase.org/literature/article.do?method=display&articleId=43038 importazole inhibits importin] | |||
*[http://www.xenbase.org/literature/article.do?method=display&articleId=42068 M119] | |||
*[http://www.xenbase.org/literature/article.do?method=display&articleId=42068 GBG or GBetaGamma or G Protein Beta Gamma] | |||
*[[LY-294002| LY-294002 inhibits PI3K and autophagy]] | |||
==Models of Anemia== | |||
*[[Phenylhydrazine]] |
Revision as of 08:37, 7 November 2018
Notice to our users
Please help us to improve this small molecules wiki and our other wikis by registering for a wiki account through our normal feedback email.
Important small molecule references
- Database of Small Molecules by Feldman and Hogue 2006 at PubChem
- Wnt/Notch by Myers and Krieg 2014
- Ubiquitin-proteasome by Salic and King 2005
Alphabetical List of Small Molecules With Literature References
- 1,3-Dicyclohexylurea
- 11-cis retinal
- 18alpha-glycyrretinic acid
- 2'-deoxyadenosine
- 2-APB
- 3,3,5-triiodothyronine (T3)
- 5HT (seratonin)
- 8-Pcpt-2-O-Me-cAMP-AM
- activin
- AG1296
- AG1879
- AGN193109
- alpha-amanitin
- anandamide
- apelin
- aphidicolin
- AZD1480
- Bafilomycin A1
- BAPTA-AM
- Barasertib
- Benzaldehyde, 3-allyl-2-(2-(diethylamino)ethoxy)-(DEAB)
- beta-xyloside
- blebbistatin
- BMS-453
- Brefeldin A (BFA)
- bumetanide
- calcium ionophore
- CGP54626
- Chelerythrine
- chenodeoxycholic acid
- chymostatin
- Citral
- Colcemide
- concanamycin
- cycloheximide
- cyclopamine
- Cyclosporin A
- Cytochalasin B
- cytochalasin D
- D-AP5
- D-NAME
- Demecolcine
- deltamethrin
- dexamethosone
- DHT(dihydrotestosterone)
- diazepam
- Difopein
- Diphenyleneiodonium Chloride
- DMH-1
- Dorsomorphin
- DRB
- Ex-527
- finasteride
- folic acid
- forskolin
- fusicoccin
- gallein
- gentamycin
- GSK3-inhibitor IX (BIO)
- GM6001
- H-89 Dihydrochloride
- heptanol
- herbimycin A
- Hydroxyurea
- IBMX
- jasplakinolide
- 6-B345TTQ
- KT 5720
- L-NAME
- lansoprazole
- latrunculin A
- latrunculin B
- LDN-193189
- leucovorin
- LiCl
- LY294002
- m-3M3FBS
- methotrexate (MTX)
- metronidazole
- Mg132
- MMP-2 inhibitor II
- MS-275
- nicorandil
- Nicotinamide
- Nicotinic acid
- nifedipine
- nocodazole
- NSC-87877
- o-phenanthroline
- okadaic acid
- olomoucine
- ouabain
- PD173074
- PD-407824
- p-MPPI
- Paclitaxel
- phaclofen
- Picropodophyllin
- PMA
- PP2
- primaquine
- Progesterone
- propylthiouracil
- pyrimethamine
- quinpirole
- rac1 inhibitor
- rapamycin
- retinoic acid
- Retinol
- RO-3306
- RS67333
- RU486
- SAHA
- SB 203580
- SB431542
- SB 505124
- SCH28080
- SNAP
- sodium nitroprusside
- SP600125
- SU5402
- SU6656
- Suramin
- tautomycin
- taxol
- thyroxine (T4)
- Torin 2
- Trichostatin A
- trimetrexate
- TTNPB
- Tubercidin
- tunicamycin
- Tyrphostin AG 1478
- U73122
- Y27632
- ZM 447439
The Following are in need of standardization and curation
- AM251
- AM281
- AP1510
- AR-A014418
- BHQ
- b-aminoproprionitrile
- beclomethasone
- Butyrate
- calcicludine
- Calyculin A
- celastrol
- celecoxib
- chromanol 293B
- chlorate
- cytochalasin D
- colchicine
- dimethyloxallyl glycine (DMOG)
- diclofenac
- etoposide
- IWR1
- GW843682X
- leptomycin B
- LY320135
- methylcellulose (MC)
- methimazole
- MBCD or MBetaCD
- MS222
- nicardipine
- Nu6102
- phenylthiourea (PTU)
- purmorphamine
- Pyrazoleanthrone
- R(+)BayK 8644
- RHC80267
- RL-3
- SAG
- SB-431542
- TG003
- Thapsigargin
- U0126
- ursodeoxycholic acid
- Echinomycin
- Gö 6983
- phenylhydrazine
- ω-conotoxin–GVIA
- flunarizine
- tetrodotoxin
- veratridine
- NBI-27914
Small Molecules Affecting Pathways
cAMP
CDK/Cyclins
ERK/MAPK
Folic Acid
JAK/STAT
JNK
Nitric Oxide
PDGF
Retinoic Acid
Shh
TGF-beta/BMP
Thyroid Signaling
Wnt
Epigenetics
Protease Inhibitors
- chymostatin
- GM6001 (MMP inhibitor)
- o-phenanthroline(MMP inhibitor)
- BB-94 MMP inhibitor
- GI254023X MMP10 inhibitor
Small Molecules affecting Biological Functions & Processes
Angiogenesis
Apoptosis
Autophagy
Calcium Signaling
Circadian Rhythm
Cytoskeletal Inhibitors
- Cytochalasin B
- cytochalasin D
- Colcemide
- jasplakinolide is an activator
- latrunculin B
- taxol
- Paclitaxel
Cell Cycle, including mitosis
Cilia
DNA Damage/Repair
DNA Synthesis
Growth Cone, Filopodia, and other Cytoskeletal projections
- PP2
- SU6656
- cytochalasin D 0.1 uM Sigma
- latrunculin B 30nM Sigma
- colchicine 12.5uM Sigma
- nocodazole 0.1uM Sigma
- RHC80267
Hatching
Left-Right Patterning
Metamorphosis
Neurotransmission
Protein Recycling
Drugs by Gene Class
Channels, including ATPases
G Protein Receptors
Kinases
Phosphatases
Small GTPases
Protein Synthesis
- anisomycin 40uM Sigma
- cycloheximide 40uM
Retinoids
- TTNPB Sigma
Textpresso Small Molecules to Research
- importazole inhibits importin
- M119
- GBG or GBetaGamma or G Protein Beta Gamma
- LY-294002 inhibits PI3K and autophagy