Xenopus development stages and Small Molecules for Xenopus Research: Difference between pages

From XenWiki
(Difference between pages)
Jump to navigation Jump to search
imported>Xenbase
No edit summary
 
imported>Mfisher
 
Line 1: Line 1:
*Embryonic Stage
==Notice to our users==
**[[Stage 1]]
Please help us to improve this small molecules wiki and our other wikis by registering for a wiki account through our normal feedback email.
**Cleavage
***[[Stage 2]]
***[[Stage 3]]
***[[Stage 4]]
***[[Stage 5]]
***[[Stage 6]]
**Blastula
***[[Stage 7]]
***[[Stage 8]]
***[[Stage 9]]
**Gastrula
***[[Stage 10]]
***[[Stage 11]]
***[[Stage 12]]
**Neurula
***[[Stage 13]]
***[[Stage 14]]
***[[Stage 15]]
***[[Stage 16]]
***[[Stage 17]]
***[[Stage 18]]
***[[Stage 19]]
***[[Stage 20]]
***[[Stage 21]]
**Tailbud
***Early tailbud
****[[Stage 22]]
****[[Stage 23]]
****[[Stage 24]]
****[[Stage 25]]
****[[Stage 26]]
****[[Stage 27]]
****[[Stage 28]]
***Late tailbud
****[[Stage 29/30|Stage 29 and 30]]
****[[Stage 31]]
****[[Stage 32]]
****[[Stage 33/34|Stage 33 and 34]]
****[[Stage 35/36|Stage 35 and 36]]
****[[Stage 37/38|Stage 37 and 38]]
****[[Stage 39]]
****[[Stage 40]]
****[[Stage 41]]
****[[Stage 42]]
****[[Stage 43]]
****[[Stage 44]]
**Tadpole
***Premetamorphosis
****[[Stage 45]]
****[[Stage 46]]
****[[Stage 47]]
****[[Stage 48]]
****[[Stage 49]]
****[[Stage 50]]


==Important small molecule references==
*[http://www.xenbase.org/literature/article.do?method=display&articleId=35021 Database of Small Molecules by Feldman and Hogue 2006] at [https://pubchem.ncbi.nlm.nih.gov/ PubChem]
*[http://www.xenbase.org/literature/article.do?method=display&articleId=47903 Wnt/Notch by Myers and Krieg 2014]
*[http://www.xenbase.org/literature/article.do?method=display&articleId=970 Ubiquitin-proteasome by Salic and King 2005]


Digitized images and developmental data from Nieuwkoop and Faber (1994) Normal Table of Xenopus laevis (Daudin). Garland Publishing Inc, New York.  Copyright © 1994 Pieter D. Nieuwkoop and J. Faber.
==Alphabetical List of Small Molecules With Literature References==


Digital photographs of Xenopus embryos used with permission by Barbra Lom, work performed by William Graham, and Ian Willoughby. All rights reserved. No portion of them can be used without prior expressed permission [http://www.bio.davidson.edu/people/balom/StagingTable/Preface.html].
*[[11-cis retinal]]
*[[18alpha-glycyrretinic acid]]
*[[3,3,5-triiodothyronine (T3)]]
*[[5HT (seratonin)]]
*[[activin]]
*[[AG1296]]
*[[AG1879]]
*[[AGN193109]]
*[[alpha-amanitin]]
*[[anandamide]]
*[[apelin]]
*[[aphidicolin]]
*[[AZD1480]]
*[[BAPTA-AM]]
*[[BMS-453]]
*[[beta-xyloside]]
*[[bumetanide]]
*[[calcium ionophore]]
*[[CGP54626 ]]
*[[Chelerythrine]]
*[[chymostatin ]]
*[[Colcemide]]
*[[concanamycin]]
*[[cycloheximide]]
*[[cyclopamine]]
*[[Cyclosporin A]]
*[[Cytochalasin B]]
*[[cytochalasin D]]
*[[Colcemide|Demecolcine]]
*[[deltamethrin]]
*[[dexamethosone]]
*[[DHT(dihydrotestosterone)]]
*[[diazepam]]
*[[Ex-527]]
*[[forskolin]]
*[[fusicoccin]]
*[[gentamycin]]
*[[GM6001]]
*[[heptanol]]
*[[herbimycin A]]
*[[IBMX]]
*[[jasplakinolide]]
*[[KT 5720]]
*[[lansoprazole]]
*[[LiCl]]
*[[Mg132]]
*[[MMP-2 inhibitor II]]
*[[nicorandil]]
*[[nifedipine]]
*[[nocodazole]]
*[[NSC-87877]]
*[[o-phenanthroline]]
*[[okadaic acid]]
*[[olomoucine]]
*[[ouabain]]
*[[PD-407824]]
*[[p-MPPI]]
*[[taxol|Paclitaxel]]
*[[phaclofen]]
*[[PMA]]
*[[PP2]]
*[[primaquine]]
*[[propylthiouracil]]
*[[quinpirole]]
*[[rapamycin]]
*[[retinoic acid]]
*[[RS67333]]
*[[RU486]]
*[[SB 203580]]
*[[SCH28080]]
*[[sodium nitroprusside]]
*[[SP600125 ]]
*[[SU5402]]
*[[SU6656]]
*[[Suramin]]
*[[tautomycin]]
*[[taxol]]
*[[thyroxine (T4)]]
*[[TTNPB]]
*[[tunicamycin]]
*[[Y27632]]
*[[ZM 447439]]
 
The Following are in need of standardization and curation
*[[AP1510]]
*[[AR-A014418]]
*[[BHQ]]
*[[b-aminoproprionitrile]]
*[[beclomethasone]]
*[[Butyrate]]
*[[celastrol]]
*[[celecoxib]]
*[[chromanol 293B]]
*[[cytochalasin D]]
*[[colchicine]]
*[[diclofenac]]
*[[etoposide]]
*[[GW843682X]]
*[[latrunculin B]]
*[[methimazole]]
*[[MBCD or MBetaCD]]
*[[MS222]]
*[[nicardipine]]
*[[Nu6102]]
*[[PTU|propylthiouracil(PTU) inhibits thyroxine]]
*[[PTU|phenylthiouracil(PTU inhibits melanophore formation]]
*[[purmorphamine]]
*[[Pyrazoleanthrone]]
*[[R(+)BayK 8644]]
*[[RHC80267]]
*[[RL-3]]
*[[SB-431542]]
*[[SB505124]]
*[[TG003]]
*[[Thapsigargin]]
*[[Trichostain A]]
*[[U0126]]
*[[U73122]]
*[[Echinomycin]]
*[[Gö 6983]]
*[[phenylhydrazine]]
 
==List of Molecules Affecting Specific Pathways==
===cAMP===
*[[IBMX]]
*[[RU486]]
 
===CDK/Cyclins===
*[[olomoucine]]
 
===ERK/MAPK===
*[[U0126]]
 
===JAK/STAT===
*[[AZD1480]]
 
===JNK===
*[[SP600125]]
*[[Pyrazoleanthrone]]
 
===Nitric Oxide===
*[[sodium nitroprusside]]
 
===PDGF===
*[[AG1296]]
*[[AP1510]]
 
===Retinoic Acid===
*[[AGN193109]]
*[[retinoic acid]]
*[[TTNPB]]
*[[BMS-453]]
 
===Shh===
*[[cyclopamine]]
*[[purmorphamine]]
 
===TGF-beta/BMP===
*[[SB-431542]]
*[[SB505124]]
 
===Thyroid Signaling===
*[[PTU]]
 
===Wnt===
*[[LiCl]]
 
===Epigenetics===
*[[Ex-527]]
 
===Protease Inhibitors===
*[[chymostatin]]
*[[GM6001|GM6001 (MMP inhibitor)]]
*[[o-phenanthroline|o-phenanthroline(MMP inhibitor)]]
*[[BB-94|BB-94 MMP inhibitor]]
*[[GI254023X| GI254023X MMP10 inhibitor]]
 
==Small Molecules by Biological Function==
===Angiogenesis===
*[[herbimycin A]]
*[[Suramin]]
 
===Apoptosis===
*[[cycloheximide]]
*[[alpha-amanitin]]
*[[Cyclosporin A]]
*[[2,2ʹ-Methylenebis(1,3-cyclohexanedione)]]
*[[NS3694]]
 
===Autophagy===
*[[LY-294002]]
 
===Calcium Signaling===
*[[nifedipine]]
*[[R(+)BayK 8644]]
*[[nicardipine]]
*[[deltamethrin]]
*[[BHQ]]
*[[Thapsigargin]]
 
===Circadian Rhythm===
*[[quinpirole]]
 
===Cytoskeletal Inhibitors===
*[[Cytochalasin B]]
*[[cytochalasin D]]
*[[Colcemide]]
*[[jasplakinolide]] is an activator
*[[taxol]]
*[[taxol|Paclitaxel]]
 
===Cell Cycle, including mitosis===
*[[Colcemide]]
*[[olomoucine]]
*[[PD-407824]]
 
===DNA Damage/Repair===
*[[etoposide]]
 
===Growth Cone, Filopodia, and other Cytoskeletal projections===
*[[PP2]]
*[[SU6656]]
*[[cytochalasin D]] 0.1 uM Sigma
*[[latrunculin B]] 30nM Sigma
*[[colchicine]] 12.5uM Sigma
*[[nocodazole]] 0.1uM Sigma
*[[RHC80267]]
 
===Hatching===
*[[ouabain]]
 
===Metamorphosis===
*[[3,3,5-triiodothyronine (T3)]]
*[[methimazole]]
*[[propylthiouracil]]
*[[thyroxine (T4)]]
 
===Neurotransmission===
*[[diazepam]]
*[[p-MPPI]]
*[[phaclofen]]
*[[RS67333]]
*[[deltamethrin]]
 
===Protein Recycling===
*[[primaquine]]
 
==Drugs by Gene Class==
 
===Channels, including ATPases===
*[[ouabain]]
===G Protein Receptors===
*[[purmorphamine]]
===Kinases===
*[[KT 5720]]
*[[olomoucine]]
*[[PD-407824]]
*[[SB 203580]]
*[[Y27632]]
*[[ZM 447439]]
 
===Phosphatases===
*[[Cyclosporin A]]
*[[deltamethrin]]
*[[okadaic acid]]
*[[tautomycin]]
 
===Small GTPases===
 
 
===Protein Synthesis===
*[[anisomycin]] 40uM Sigma
*[[cycloheximide]] 40uM
 
==Textpresso Small Molecules to Research==
*[http://www.xenbase.org/literature/article.do?method=display&articleId=43038 importazole inhibits importin]
*[http://www.xenbase.org/literature/article.do?method=display&articleId=42068 M119]
*[http://www.xenbase.org/literature/article.do?method=display&articleId=42068 GBG or GBetaGamma or G Protein Beta Gamma]
*[[LY-294002| LY-294002 inhibits PI3K and autophagy]]
 
==Models of Anemia==
*[phenylhydrazine]

Revision as of 12:56, 8 August 2016

Notice to our users

Please help us to improve this small molecules wiki and our other wikis by registering for a wiki account through our normal feedback email.

Important small molecule references

Alphabetical List of Small Molecules With Literature References

The Following are in need of standardization and curation

List of Molecules Affecting Specific Pathways

cAMP

CDK/Cyclins

ERK/MAPK

JAK/STAT

JNK

Nitric Oxide

PDGF

Retinoic Acid

Shh

TGF-beta/BMP

Thyroid Signaling

Wnt

Epigenetics

Protease Inhibitors

Small Molecules by Biological Function

Angiogenesis

Apoptosis

Autophagy

Calcium Signaling

Circadian Rhythm

Cytoskeletal Inhibitors

Cell Cycle, including mitosis

DNA Damage/Repair

Growth Cone, Filopodia, and other Cytoskeletal projections

Hatching

Metamorphosis

Neurotransmission

Protein Recycling

Drugs by Gene Class

Channels, including ATPases

G Protein Receptors

Kinases

Phosphatases

Small GTPases

Protein Synthesis

Textpresso Small Molecules to Research

Models of Anemia

  • [phenylhydrazine]
Retrieved from "https://wiki.xenbase.org/xenwiki/index.php?title=Xenopus_development_stages&oldid=47615"