XB-FEAT-1001094: Difference between revisions
| Line 22: | Line 22: | ||
=orthology and synteny= | =orthology and synteny= | ||
DIOPT/EggNog matches this protein with high confidence to >1700 sequences in >800 species, and the majority of genes/ | DIOPT/EggNog matches this protein with high confidence to 3 groups of CYPgenes: | ||
1) ~890 seqs from~200species, including Mouse, Pteropus vampyrus (a bat), Otolemur garnettii (a lemur) and Cavia porcellus ( guinea pig) seqs for Cyp27b1, Cyp24a1 and Cyp27a1 ( thus inclusding not'cyp27a'1 as suggested by the provisional name for loc100496109/XB1001094.) | |||
2) genes called Mouse genes Cyp27b1, Cyp11b2, Cyp11b1, Cyp24a1, Cyp11a1, Cyp27a1 | |||
and 3) >1700 sequences in >800 species, and the majority of genes/proteens (where named) are called CYP11A1, not'cyp27a1' | |||
Synteny supoorts .... | |||
Revision as of 10:39, 17 May 2023
loc100496109
This is the community wiki page for the gene loc100496109 please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase
protein
The protein associated with Xtrop XB-GENE-1001095 GENEID:100496109 is called 'sterol 26-hydroxylase, mitochondrial' [Xenopus tropicalis]
NCBI Reference Sequence: XP_002933985.3
FASTA
>XP_002933985.3 sterol 26-hydroxylase, mitochondrial [Xenopus tropicalis] MTGLSSLMHSPRLIRNIQAQLTGTMPSASKLGFLPLGRCRWLLHTGRGVSVSQGRAVAGAAVGAVGEEKK MKTFEDLPGPSLLTNIYWVFLRGYILYTHELQAIYKKNYGPMWKSTLGRYKTVNIADVDILETVLRQEGK YPMRSDMEVWKEHRRQRDLSLGPFTEEGHKWHTLRSVLNKRMLKPAEAMLYTGVVNEVVTDFLVRLEEMR SETPSGDMVNDIPNALYRFAFEGISYILFETRIGCLEKQIPVETQRFIDSIGAMLKNSIFVTIFPPWTNN LLPYYKRYMDSWDNIFAFGNKLINEKMKKIEARLERDEEVQGEYLTYLISSGKLTDKEIYGSVAELLLAG VDTTSNTLSWALYHLAREPEIQNALYQEVIGVVPGQNIPTSEDMSSMPLLRAVIKETLRLYPVVPTNSRV AVEKAITIGDYYFPKDTLIALHHYHISRDEKNFPESDKFIPQRWFRESRVKNNPFSSIPFGYGVRACVGR RIAELEMHMCLSRIIKKYEVRPDPSGAEIKSMARIVLTPHKPINLRFLPRTPSPSA
orthology and synteny
DIOPT/EggNog matches this protein with high confidence to 3 groups of CYPgenes:
1) ~890 seqs from~200species, including Mouse, Pteropus vampyrus (a bat), Otolemur garnettii (a lemur) and Cavia porcellus ( guinea pig) seqs for Cyp27b1, Cyp24a1 and Cyp27a1 ( thus inclusding not'cyp27a'1 as suggested by the provisional name for loc100496109/XB1001094.)
2) genes called Mouse genes Cyp27b1, Cyp11b2, Cyp11b1, Cyp24a1, Cyp11a1, Cyp27a1
and 3) >1700 sequences in >800 species, and the majority of genes/proteens (where named) are called CYP11A1, not'cyp27a1'
Synteny supoorts ....