XB-FEAT-1013836: Difference between revisions
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=inppl1a= | =''inppl1a''= | ||
This is the community wiki page for the gene ''inppl1a'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase | This is the community wiki page for the gene ''inppl1a'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase. | ||
= | =nomenclature changes= | ||
09FEB2023 | 09FEB2023 | ||
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Most vertebrates groups have two INPPL1 genes but mammals have lost one of them (INPPL1B). | Most vertebrates groups have two INPPL1 genes but mammals have lost one of them (INPPL1B). | ||
XB created a new genepage XB-GENEPAGE-29071321 for ''inppl1b'' to include Xtrop GeneID: 100496685 and Xla.L GeneID: 108698315 . | |||
NB: There is '''no''' X.laevis ''inppl1b.S'' gene in the v10 assemblies/genome annotation | |||
=synteny patterns for INPPL1A/B in Vertebrates= | =synteny patterns for INPPL1A/B in Vertebrates= | ||
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Rana XP_040189969.1 | |||
'''INPPL1'''> PHOX2A< CLPB< | |||
Microcacaelia XP_030055838.1 | |||
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D. rerio NP_001034893.1 | D. rerio NP_001034893.1 | ||
SIK3/SIDT2< '''INPPL1A'''> PHOX2A< CLPB< LOC< folr< ANAPC15> | SIK3/SIDT2< '''INPPL1A'''> PHOX2A< CLPB< LOC< folr< ANAPC15> | ||
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crocodile XP_019391783.1[misnamed INPPL1], chelonia XP_043377770.1 | |||
PDZD11> stard10-like< RAB41< ARR3< '''inppl1-like>''' P2RY4> dgat2< IGBP1< | PDZD11> stard10-like< RAB41< ARR3< '''inppl1-like>''' P2RY4> dgat2< IGBP1< | ||
Xtrop XP_031746720.1 | |||
stard10-like< RAB41< ARR3< '''inppl1-like'''> P2RY4> DGAT2L6< IGBP1< | stard10-like< RAB41< ARR3< '''inppl1-like'''> P2RY4> DGAT2L6< IGBP1< | ||
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Microcacaelia XP_030065653.1 | |||
RAB41< '''inppl1-like>''' IGBP1< | RAB41< '''inppl1-like>''' IGBP1< | ||
Protoperus XP_043913229.1 | |||
PDZD11> stard10-like< rab41< ARR3< ''inppl1-like>'' p2ry4< p2ry4> | PDZD11> stard10-like< rab41< ARR3< ''inppl1-like>'' p2ry4< p2ry4> | ||
Latest revision as of 10:58, 6 June 2023
inppl1a
This is the community wiki page for the gene inppl1a please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase.
nomenclature changes
09FEB2023
Xenopus gene name for XB-GENEPAGE-1013836 changed from inppl1, inositol polyphosphate phosphatase-like 1 to inppl1a, inositol polyphosphate phosphatase-like 1a
this follows examination of INPPL1 genes in vertebrates.
Most vertebrates groups have two INPPL1 genes but mammals have lost one of them (INPPL1B).
XB created a new genepage XB-GENEPAGE-29071321 for inppl1b to include Xtrop GeneID: 100496685 and Xla.L GeneID: 108698315 .
NB: There is no X.laevis inppl1b.S gene in the v10 assemblies/genome annotation
synteny patterns for INPPL1A/B in Vertebrates
Source: DAVID WEBB @REFSEQ NCBI
INPPL1 (aka INPPL1A) HUMAN: ANAPC15< FOLR3> FOLR1> FOLR2> INPPL1> PHOX2A< CLPB< PDE2A<
MonDom
ANAPC15<folr3> folr1> folr2> INPPL1> PHOX2A< CLPB< LOC<
echidna XP_038620978.1
LAMTOR1< ANAPC15< LOC< LOC> folr> INPPL1> PHOX2A< CLPB< LOC>
Pheasant XP_031456985
LAMTOR1< LOC> ANAPC15< folr> INPPL1> PHOX2A< CLPB<
GALLUS XM_040656636.1[PARTIAL], emu XP_025978297.1
//inppl1>//
chelonia XP_037769744.1
ANAPC15<folr3> folr1> folr2> INPPL1> PHOX2A< CLPB< STARD10>
podarcis XP_028581607.1
LAMTOR1< LOC> ANAPC15< folr> INPPL1> PHOX2A< CLPB< STARD10>
Xtr XP_031753288.1
LAMTOR1< SFRPX> tomt< FOLR1> INPPL1> PHOX2A< CLPB<
Rana XP_040189969.1
INPPL1> PHOX2A< CLPB<
Microcacaelia XP_030055838.1
LAMTOR1< LOC> folr> INPPL1> PHOX2A< CLPB< STARD10>
D. rerio NP_001034893.1
SIK3/SIDT2< INPPL1A> PHOX2A< CLPB< LOC< folr< ANAPC15>
INPPL1B
Human, koala
PDZD11> RAB41< ARR3< P2RY4> AWAT1< DGAT2L6< IGBP1<
platypus
PDZD11> stard10-like< RAB41< ARR3< awat1< dgat2l6< IGBP1<
Gallus XP_015133832.2
PDZD11> stard10-like< RAB41< ARR3< "INNPL1"> P2RY4> AWAT1/dgat2< IGBP1<
Pheasant XP_031449847.1, emu XP_025951802.1
PDZD11> stard10-like< RAB41< ARR3< inppl1-like> P2RY4> dgat2< IGBP1<
crocodile XP_019391783.1[misnamed INPPL1], chelonia XP_043377770.1
PDZD11> stard10-like< RAB41< ARR3< inppl1-like> P2RY4> dgat2< IGBP1<
Xtrop XP_031746720.1
stard10-like< RAB41< ARR3< inppl1-like> P2RY4> DGAT2L6< IGBP1<
Rana XP_040190387.1
ARR3< innpl1-like> p2ry4> loc< PDZD11<
Microcacaelia XP_030065653.1
RAB41< inppl1-like> IGBP1<
Protoperus XP_043913229.1
PDZD11> stard10-like< rab41< ARR3< inppl1-like> p2ry4< p2ry4>
D.rerio INPPL1B NP_001034224.2
ARR3B< INPPL1B > P2RY4> SOX3>