XB-FEAT-22062350: Difference between revisions
(Created page with "=''nat2''= This is the community wiki page for the gene ''nat2'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere...") |
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Xenopus gene symbol/name changed from XB22062350 [provisional:nat2], to nat2, N-acetyltransferase 2. | Xenopus gene symbol/name changed from XB22062350 [provisional:nat2], to nat2, N-acetyltransferase 2. | ||
=orthology= | |||
DIOPT/EggNog analysis of the Xtrop protein confirms that this gene is a N-acetyltransferase, matching it to >1500 proteins in over 1200 species. | |||
Further comparison of synteny required to determine if it is the true ortholog of human NAT2, as NCBi only lists mammalian orthologs. It may be better called nat1? | |||
==protein used in orthology analysis= | |||
arylamine N-acetyltransferase 2 isoform X1 [Xenopus tropicalis] | |||
NCBI Reference Sequence: XP_004915070.1 | |||
>XP_004915070.1 arylamine N-acetyltransferase 2 isoform X1 [Xenopus tropicalis] | |||
MVPTTCIMSTLQIGSFRLHVSVICALPPALCSAYTTPPHYIQLLPSIHNPSPLQTAPPLYTQLLPEFNFH | |||
FGCPRWGKICDCSAGVGRMDLKGYLHRVGLSTQKPPSLTALRELHHRHLLSVPFGSLGIHSGERIILDHT | |||
LLYDKIVVRRQDGFCYENNGLFLWVLRESGYQPVVLSARVCNSITGVYGPPYDHMILAVELEGQRWLCDV | |||
GFGEGIAFPIPLEAGWEGEHPSGVFRLQKAEEEWYLERKEDGGWRSLYKFRLEEKRFEDFRDMCDYHQMS | |||
PSSIFFCKSFCSLLLPRGRATYMGCRLISTEYTAGGGTVKSTTELTEGEIPRVLRETFGIVLNGKLVPKD | |||
EPIVPPECD | |||
Revision as of 12:46, 26 April 2023
nat2
This is the community wiki page for the gene nat2 please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase.
nomenclature changes
Xenopus gene symbol/name changed from XB22062350 [provisional:nat2], to nat2, N-acetyltransferase 2.
orthology
DIOPT/EggNog analysis of the Xtrop protein confirms that this gene is a N-acetyltransferase, matching it to >1500 proteins in over 1200 species.
Further comparison of synteny required to determine if it is the true ortholog of human NAT2, as NCBi only lists mammalian orthologs. It may be better called nat1?
=protein used in orthology analysis
arylamine N-acetyltransferase 2 isoform X1 [Xenopus tropicalis] NCBI Reference Sequence: XP_004915070.1
>XP_004915070.1 arylamine N-acetyltransferase 2 isoform X1 [Xenopus tropicalis] MVPTTCIMSTLQIGSFRLHVSVICALPPALCSAYTTPPHYIQLLPSIHNPSPLQTAPPLYTQLLPEFNFH FGCPRWGKICDCSAGVGRMDLKGYLHRVGLSTQKPPSLTALRELHHRHLLSVPFGSLGIHSGERIILDHT LLYDKIVVRRQDGFCYENNGLFLWVLRESGYQPVVLSARVCNSITGVYGPPYDHMILAVELEGQRWLCDV GFGEGIAFPIPLEAGWEGEHPSGVFRLQKAEEEWYLERKEDGGWRSLYKFRLEEKRFEDFRDMCDYHQMS PSSIFFCKSFCSLLLPRGRATYMGCRLISTEYTAGGGTVKSTTELTEGEIPRVLRETFGIVLNGKLVPKD EPIVPPECD