XB-FEAT-22065335: Difference between revisions
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=Synteny in ''Xenopus''= | =Synteny in ''Xenopus''= | ||
Xtr v10 Chr7: LOC116412206(unch/lncRNA)> '''LOC116412415(unch)''' timm8b.L< sdhd.L> | |||
Xla v10 | Xla v10 Chr7L: '''LOC108697003(mypopl#)> LOC121395551(mypopl#)>''' '''msantdl.2.L(now mypopl2)'''> timm8b.L< sdhd.L> | ||
Xla v10 Chr7S: LOC121396476(cfap251)< timm8b.S< sdhd.S> | |||
In v10 Xlaevis genome annotation, there is a duplication with 3 ''mypop'' genes on the L subgenome, but no ''mypopl'' gene model is present Xla.S subgenome on Chr7S. | |||
Using the gene immediately adjacent to ''timm8b'' as the anchor, we have therefore assigned the folowing gene symbols: | |||
* X. tropicalis GENE ID: 116412415 as ''mypopl2, myb-related transcription factor, partner of profilin like 2 gene 1'' | |||
* Xlaevis Gene DI:108696494 as ''mypopl2.L (myb-related transcription factor, partner of profilin like 2 gene 1 L homeolog) | |||
* Xla LOC121395551 Gene ID:121395551 as ''mypopl2.2.L, myb-related transcription factor, partner of profilin like 2 gene 2 L homeolog) | |||
* Xla LOC108697003 Gene ID:108697003 as ''mypopl2.3.L, myb-related transcription factor, partner of profilin like 2 gene 3 L homeolog | |||
Revision as of 10:50, 8 June 2023
mypopl2
This is the community wiki page for the gene mypopl2 please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase.
nomenclature and orthology notes
07JUNE 2023 Following review and analysis by Xenbase, this gene has been renamed, changing from msantdl.2 to mypopl2, myb-related transcription factor, partner of profilin like 2, gene 1).
Synteny in Xenopus
Xtr v10 Chr7: LOC116412206(unch/lncRNA)> LOC116412415(unch) timm8b.L< sdhd.L>
Xla v10 Chr7L: LOC108697003(mypopl#)> LOC121395551(mypopl#)> msantdl.2.L(now mypopl2)> timm8b.L< sdhd.L>
Xla v10 Chr7S: LOC121396476(cfap251)< timm8b.S< sdhd.S>
In v10 Xlaevis genome annotation, there is a duplication with 3 mypop genes on the L subgenome, but no mypopl gene model is present Xla.S subgenome on Chr7S.
Using the gene immediately adjacent to timm8b as the anchor, we have therefore assigned the folowing gene symbols:
- X. tropicalis GENE ID: 116412415 as mypopl2, myb-related transcription factor, partner of profilin like 2 gene 1
- Xlaevis Gene DI:108696494 as mypopl2.L (myb-related transcription factor, partner of profilin like 2 gene 1 L homeolog)
- Xla LOC121395551 Gene ID:121395551 as mypopl2.2.L, myb-related transcription factor, partner of profilin like 2 gene 2 L homeolog)
- Xla LOC108697003 Gene ID:108697003 as mypopl2.3.L, myb-related transcription factor, partner of profilin like 2 gene 3 L homeolog