XB-FEAT-25874688: Difference between revisions
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(Created page with "=''trat1l''= This is the community wiki page for the gene ''trat1l'' please feel free to add any information that is relevant to this gene that is not already captured elsewh...") |
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This is the community wiki page for the gene ''trat1l'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase. | This is the community wiki page for the gene ''trat1l'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase. | ||
=orthogy | =orthogy and synteny= | ||
Synteny (gene pattern) is not conserved between Human/mouse and ''Xenopus' for this ''trat1-like'' gene, although DIOPT/EggNog does match the protein with TRAT1 ortholgy group of 85 proteins/species with very high confidence. | Synteny (gene pattern) is not conserved between Human/mouse and ''Xenopus' for this ''trat1-like'' gene, although DIOPT/EggNog does match the protein with TRAT1 ortholgy group of 85 proteins/species with very high confidence. | ||
For this reason, we will keep the Human TRAT1 listed as the ortholog, but do not change its name from ''trat1l'' as there is another ''trat1'' gene in ''Xenopus'', represented on XB-GENEPAGE-949454, which are the true synetic ortholgs. | For this reason, we will keep the Human TRAT1 listed as the ortholog, but do not change its name from ''trat1l'' as there is another ''trat1'' gene in ''Xenopus'', represented on XB-GENEPAGE-949454, which are the true synetic ortholgs. | ||
Revision as of 11:32, 7 June 2023
trat1l
This is the community wiki page for the gene trat1l please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase.
orthogy and synteny
Synteny (gene pattern) is not conserved between Human/mouse and Xenopus' for this trat1-like gene, although DIOPT/EggNog does match the protein with TRAT1 ortholgy group of 85 proteins/species with very high confidence.
For this reason, we will keep the Human TRAT1 listed as the ortholog, but do not change its name from trat1l as there is another trat1 gene in Xenopus, represented on XB-GENEPAGE-949454, which are the true synetic ortholgs.