XB-FEAT-29072461: Difference between revisions
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=''scrt2''= | =''scrt2''= | ||
This is the community wiki page for the gene ''scrt2'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase. | This is the community wiki page for the gene ''scrt2'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase. | ||
=synteny= | |||
There are 2 'scrat' gene in ''Xenopus'' with conserved synteny with human justifing the gene names as applied here: | |||
'''''Xenopus scrt1'' genes are on Chr6/6S, flanked by ''dgat1'' and ''fbxl6'''.'' | |||
Human chr8 [Gene ID]: 83482: DGAT1... '''SCRT1'''.... TME249.... FBXL6 | |||
Xtrop chr6: [GeneID:100486069]: dgat1 ...LOC(tbc1d20) ... loc(cytb11b) ...'''scrt1''' ... fbxl6 ... slc52a1 | |||
Xla.Chr6S: nuggc.S ... LOC(mfsd3)... slc39a4... LOC(cpsf1)... '''scrt1.S''' | |||
''Xenopus scrt2'' is on chr10/9_10L/9_10S flanked by ''tcf15, srcn1 and slc52a3''. | |||
XtrChr9 GeneID:116407977: tcf15 .. srxn1 ... '''LOC116407977(scratch family transcriptional repressor 2)''' ... | |||
XlaChr9_10L:[rv] LOC108701995(riboflavin transporter 2) ...'''LOC108700962(scrt2.L)''' ... LOC108700963(srxn1.L)... tcf15.L ... | |||
XlaChr9_10S Entrez Gene: 108695492: ... tcf15.S... srxn1.S... '''scrt2.S'''... slc52a3.S... | |||
Human Chr20: ...TCF15...SRXN1... '''SCRT2'''... SLC52A3.. | |||
Latest revision as of 14:06, 5 June 2023
scrt2
This is the community wiki page for the gene scrt2 please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase.
synteny
There are 2 'scrat' gene in Xenopus with conserved synteny with human justifing the gene names as applied here:
Xenopus scrt1 genes are on Chr6/6S, flanked by dgat1 and fbxl6.
Human chr8 [Gene ID]: 83482: DGAT1... SCRT1.... TME249.... FBXL6
Xtrop chr6: [GeneID:100486069]: dgat1 ...LOC(tbc1d20) ... loc(cytb11b) ...scrt1 ... fbxl6 ... slc52a1
Xla.Chr6S: nuggc.S ... LOC(mfsd3)... slc39a4... LOC(cpsf1)... scrt1.S
Xenopus scrt2 is on chr10/9_10L/9_10S flanked by tcf15, srcn1 and slc52a3.
XtrChr9 GeneID:116407977: tcf15 .. srxn1 ... LOC116407977(scratch family transcriptional repressor 2) ...
XlaChr9_10L:[rv] LOC108701995(riboflavin transporter 2) ...LOC108700962(scrt2.L) ... LOC108700963(srxn1.L)... tcf15.L ...
XlaChr9_10S Entrez Gene: 108695492: ... tcf15.S... srxn1.S... scrt2.S... slc52a3.S...
Human Chr20: ...TCF15...SRXN1... SCRT2... SLC52A3..