XB-FEAT-481418: Difference between revisions
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While the v9.2 ''X. laevis'' genome annotation had a scaffold site with a putative ''gdf1.S'' gene this is no longer present in v10. The original v10 annotations from NCBI had the gene on the L chromosome mistakenly labelled as ''gdf1.S'' and for a time both ''gdf1.L'' and ''gdf1.S'' had the same NCBI gene ID, this has been resolved with the NCBI ID remaining associated with only ''gdf1.L''. | While the v9.2 ''X. laevis'' genome annotation had a scaffold site with a putative ''gdf1.S'' gene this is no longer present in v10. The original v10 annotations from NCBI had the gene on the L chromosome mistakenly labelled as ''gdf1.S'' and for a time both ''gdf1.L'' and ''gdf1.S'' had the same NCBI gene ID, this has been resolved with the NCBI ID remaining associated with only ''gdf1.L''. | ||
While there is currently no ''gdf1.S'' model in the Xenbase/NCBI gff3 | While there is currently no ''gdf1.S'' model in the Xenbase/NCBI gff3 there is a model in the UCB gff (Xelaev1017004857m.g) which corresponds to the old v9.2 sequence. | ||
Latest revision as of 08:42, 7 February 2024
gdf1
This is the community wiki page for the gene gdf1 please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase
gdf1.S
While the v9.2 X. laevis genome annotation had a scaffold site with a putative gdf1.S gene this is no longer present in v10. The original v10 annotations from NCBI had the gene on the L chromosome mistakenly labelled as gdf1.S and for a time both gdf1.L and gdf1.S had the same NCBI gene ID, this has been resolved with the NCBI ID remaining associated with only gdf1.L.
While there is currently no gdf1.S model in the Xenbase/NCBI gff3 there is a model in the UCB gff (Xelaev1017004857m.g) which corresponds to the old v9.2 sequence.