XB-FEAT-5846708: Difference between revisions
imported>Xenbase (→loc100498328: Updated nomenclature, replaced: unnamed → loc100498328 (2)) |
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= | = ''nucb1l''= | ||
This is the community wiki page for the gene '' | This is the community wiki page for the gene '' nucb1l'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase | ||
=nomenclature changes= | |||
05JUNE2023 | |||
''Xenopus'' gene name changed from uncharacterized protein LOC108713706/XB5846708 [provisional] to ''nucb1l, nucleobindin 1 like'' | |||
= characterization of ''Xenopus laevis'' protein= | |||
uncharacterized protein LOC108713706 isoform X1 [Xenopus laevis] | |||
NCBI Reference Sequence: XP_041445583.1 | |||
>XP_041445583.1 uncharacterized protein LOC108713706 isoform X1 [Xenopus laevis] | |||
MGSLIVKQELATSWGPPKLICFLLISLSLPTTDCLKVVMSNTPIKSLKDQEVFVPCTFSDFSKEKLDLNL | |||
LSVHWIRKTLNGSDEVYLYVSGTHTPTRPGSYISDSEIIRGNVALHLPRVQFTDEGEYTCTVFYTPNKQW | |||
GHSTLQVSVQPTGSLQPPAGSVLIGTEKRVQCEANGFYPKDITIQWVKRLSETNCISLDKDSCTGDTSGN | |||
EDGTFNAINHLTISPSLEDDGRRYLCIIKHRSLENELKLNFTLSVTEPPHEYKTLIAALVGTFLGVLFLG | |||
LCYFLYWKFLKKEPPKLSPITGAEDLVHMNKATLSCLISEFRPKPIRITLCLQRNGGEEMEIDSWDSGTQ | |||
TVQSAKRGKQSEAIVLEEREGLLINGEANLPPAQRPLQVEMVIVITTSKFLISSCQCTIHITPDIEEDDG | |||
AELTVRVTHSALRLPDSVSCPLKVNGVKPKLSEIVSPPCIIRGEPLYLICDINGFKPKPLSITWLKLDFN | |||
GRETELLCWNRGTTSESEYSHQLCETNNEDQSNSFLSILTMKPTLQDHKATFICRTHHYATESRAEKNMQ | |||
MLVSVVPTMDPINRNHPILFVNETMEFFCKIHSFHPETLEVDWYRDDEHLSSHNGPALPDNNGLFYCSSR | |||
ITYTPCVRDIGKKFRCEVSHQSLQNPKCVFWKLKYLISEPSVSAIKCDPEVPECNQPATLSCTIEKLYPE | |||
KCTIQWYQRQKIIESTTNVIKKDPESELYTKNTEMQFIPTMSHHGVEFHVDITHKKKTIKRSFTMKLKDL | |||
PDVTEVTYNKEENKPGKPVTLTCQLIGCNAQHFTAQWQVGGAPIEKEMRAETQTGPDSVSFLLTLMPTAE | |||
HYGKLFTCLLRYKDLPQPIKKSIYLEQPLDIQN | |||
DIOPT/EggNog orthology group analaysis matches the LOC108713706 protein to 495 proetins in >250 species with GO MF:positive regulation of testosterone secretion including these accessions for Mouse and rat: | |||
Mus musculus 3 seqs 10090.ENSMUSP00000033096, 10090.ENSMUSP00000034522, 10090.ENSMUSP00000032895 Nucb1, Clmp, Nucb2 | |||
Rattus norvegicus 3 seqs 10116.ENSRNOP00000028390, 10116.ENSRNOP00000027753, 10116.ENSRNOP00000010607 Nucb1, Nucb2, Clmp | |||
and these 7 seqs in Xenopus (Silurana) | |||
.ENSXETP00000048657, 8364.ENSXETP00000048663, 8364.ENSXETP00000045911, 8364.ENSXETP00000062600, 8364.ENSXETP00000002682, 8364.ENSXETP00000034980, 8364.ENSXETP00000062440 | |||
8364.ENSXETP00000048657, 8364.ENSXETP00000048663, nucb1, 8364.ENSXETP00000062600, clmp, nucb2, 8364.ENSXETP00000062440. | |||
based solely on this quick analyis, we think we can safely update this gene name from 'uncharacterized' to Nucb1-like, and away further analsysi to charcterise it fully. | |||
Latest revision as of 13:14, 5 June 2023
nucb1l
This is the community wiki page for the gene nucb1l please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase
nomenclature changes
05JUNE2023 Xenopus gene name changed from uncharacterized protein LOC108713706/XB5846708 [provisional] to nucb1l, nucleobindin 1 like
characterization of Xenopus laevis protein
uncharacterized protein LOC108713706 isoform X1 [Xenopus laevis] NCBI Reference Sequence: XP_041445583.1
>XP_041445583.1 uncharacterized protein LOC108713706 isoform X1 [Xenopus laevis] MGSLIVKQELATSWGPPKLICFLLISLSLPTTDCLKVVMSNTPIKSLKDQEVFVPCTFSDFSKEKLDLNL LSVHWIRKTLNGSDEVYLYVSGTHTPTRPGSYISDSEIIRGNVALHLPRVQFTDEGEYTCTVFYTPNKQW GHSTLQVSVQPTGSLQPPAGSVLIGTEKRVQCEANGFYPKDITIQWVKRLSETNCISLDKDSCTGDTSGN EDGTFNAINHLTISPSLEDDGRRYLCIIKHRSLENELKLNFTLSVTEPPHEYKTLIAALVGTFLGVLFLG LCYFLYWKFLKKEPPKLSPITGAEDLVHMNKATLSCLISEFRPKPIRITLCLQRNGGEEMEIDSWDSGTQ TVQSAKRGKQSEAIVLEEREGLLINGEANLPPAQRPLQVEMVIVITTSKFLISSCQCTIHITPDIEEDDG AELTVRVTHSALRLPDSVSCPLKVNGVKPKLSEIVSPPCIIRGEPLYLICDINGFKPKPLSITWLKLDFN GRETELLCWNRGTTSESEYSHQLCETNNEDQSNSFLSILTMKPTLQDHKATFICRTHHYATESRAEKNMQ MLVSVVPTMDPINRNHPILFVNETMEFFCKIHSFHPETLEVDWYRDDEHLSSHNGPALPDNNGLFYCSSR ITYTPCVRDIGKKFRCEVSHQSLQNPKCVFWKLKYLISEPSVSAIKCDPEVPECNQPATLSCTIEKLYPE KCTIQWYQRQKIIESTTNVIKKDPESELYTKNTEMQFIPTMSHHGVEFHVDITHKKKTIKRSFTMKLKDL PDVTEVTYNKEENKPGKPVTLTCQLIGCNAQHFTAQWQVGGAPIEKEMRAETQTGPDSVSFLLTLMPTAE HYGKLFTCLLRYKDLPQPIKKSIYLEQPLDIQN
DIOPT/EggNog orthology group analaysis matches the LOC108713706 protein to 495 proetins in >250 species with GO MF:positive regulation of testosterone secretion including these accessions for Mouse and rat:
Mus musculus 3 seqs 10090.ENSMUSP00000033096, 10090.ENSMUSP00000034522, 10090.ENSMUSP00000032895 Nucb1, Clmp, Nucb2
Rattus norvegicus 3 seqs 10116.ENSRNOP00000028390, 10116.ENSRNOP00000027753, 10116.ENSRNOP00000010607 Nucb1, Nucb2, Clmp
and these 7 seqs in Xenopus (Silurana) .ENSXETP00000048657, 8364.ENSXETP00000048663, 8364.ENSXETP00000045911, 8364.ENSXETP00000062600, 8364.ENSXETP00000002682, 8364.ENSXETP00000034980, 8364.ENSXETP00000062440 8364.ENSXETP00000048657, 8364.ENSXETP00000048663, nucb1, 8364.ENSXETP00000062600, clmp, nucb2, 8364.ENSXETP00000062440.
based solely on this quick analyis, we think we can safely update this gene name from 'uncharacterized' to Nucb1-like, and away further analsysi to charcterise it fully.