XB-FEAT-5995511: Difference between revisions
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this gene was misidentified as ''scrt2'', AND IS RENAMED HERE AS SCRT1. | this gene was misidentified as ''scrt2'', AND IS RENAMED HERE AS SCRT1. | ||
Synteny supports | Synteny supports the 2nd scrt geen as teh true ortholog of human SCRT2. and to a lesser degree the idnetity of ''Xenopus scrt1'' orthologs to SCRT1: | ||
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Xla.Chr6S: nuggc.S ... LOC(mfsd3)... slc39a4... LOC(cpsf1)... ''scrt1.S'' | Xla.Chr6S: nuggc.S ... LOC(mfsd3)... slc39a4... LOC(cpsf1)... ''scrt1.S'' | ||
Xla.L Chr6L: lacks these genes cpdf1.L< LOC#9501< nuggc.L> hgh1.L> mapk15.L | |||
Revision as of 14:19, 5 June 2023
scrt1
This is the community wiki page for the gene scrt1 please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase.
nomenclature changes
27APRIL2023
this gene was misidentified as scrt2, AND IS RENAMED HERE AS SCRT1.
Synteny supports the 2nd scrt geen as teh true ortholog of human SCRT2. and to a lesser degree the idnetity of Xenopus scrt1 orthologs to SCRT1:
Xenopus scrt1 genes are on Chr6/6S, flanked by dgat1 and fbxl6.
Human chr8 [Gene ID]: 83482: DGAT1... SCRT1.... TME249.... FBXL6
Xtrop chr6: [GeneID:100486069]: dgat1 ...LOC(tbc1d20) ... loc(cytb11b) ...scrt1 ... fbxl6 ... slc52a1
Xla.Chr6S: nuggc.S ... LOC(mfsd3)... slc39a4... LOC(cpsf1)... scrt1.S
Xla.L Chr6L: lacks these genes cpdf1.L< LOC#9501< nuggc.L> hgh1.L> mapk15.L
Xenopus scrt2 is on chr10/9_10L/9_10S flanked by tcf15, srcn1 and slc52a3.
XtrChr9 GeneID:116407977: tcf15 .. srxn1 ... LOC116407977(scratch family transcriptional repressor 2) ...
XlaChr9_10L:[rv] LOC108701995(riboflavin transporter 2) ...LOC108700962(scrt2.L) ... LOC108700963(srxn1.L)... tcf15.L ...
XlaChr9_10S Entrez Gene: 108695492: ... tcf15.S... srxn1.S... scrt2.S... slc52a3.S...
Human Chr20: ...TCF15...SRXN1... SCRT2... SLC52A3..
A new gene page for Xenopus 'scrt2' was built for LOC116407977, LOC108701995 and Gene ID: 108695492, scratch family transcriptional repressor 2: See XB-GENEPAGE-29072461.