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==Alphabetical List of Small Molecules With Literature References==
==Alphabetical List of Small Molecules With Literature References==


*[[1,3-Dicyclohexylurea]]
*[[11-cis retinal]]
*[[11-cis retinal]]
*[[18alpha-glycyrretinic acid]]
*[[18alpha-glycyrretinic acid]]
*[[2'-deoxyadenosine]]
*[[2-APB]]
*[[3,3,5-triiodothyronine (T3)]]
*[[3,3,5-triiodothyronine (T3)]]
*[[5HT (seratonin)]]
*[[5HT (seratonin)]]
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*[[AZD1480]]
*[[AZD1480]]
*[[BAPTA-AM]]
*[[BAPTA-AM]]
*[[Barasertib]]
*[[Benzaldehyde, 3-allyl-2-(2-(diethylamino)ethoxy)-(DEAB)]]
*[[beta-xyloside]]
*[[beta-xyloside]]
*[[blebbistatin]]
*[[BMS-453]]
*[[bumetanide]]
*[[bumetanide]]
*[[calcium ionophore]]
*[[calcium ionophore]]
*[[CGP54626 ]]
*[[CGP54626 ]]
*[[Chelerythrine]]
*[[Chelerythrine]]
*[[chenodeoxycholic acid]]
*[[chymostatin ]]
*[[chymostatin ]]
*[[Citral]]
*[[Colcemide]]
*[[concanamycin]]
*[[concanamycin]]
*[[cycloheximide]]
*[[cycloheximide]]
*[[cyclopamine]]
*[[cyclopamine]]
*[[Cyclosporin A]]
*[[Cytochalasin B]]
*[[Cytochalasin B]]
*[[cytochalasin D]]
*[[D-AP5]]
*[[D-NAME]]
*[[Colcemide|Demecolcine]]
*[[deltamethrin]]
*[[dexamethosone]]
*[[dexamethosone]]
*[[DHT(dihydrotestosterone)]]
*[[DHT(dihydrotestosterone)]]
*[[diazepam]]
*[[diazepam]]
*[[Difopein]]
*[[Diphenyleneiodonium Chloride]]
*[[DMH-1]]
*[[Dorsomorphin]]
*[[DRB]]
*[[Ex-527]]
*[[Ex-527]]
*[[finasteride]]
*[[folic acid]]
*[[forskolin]]
*[[forskolin]]
*[[fusicoccin]]
*[[fusicoccin]]
*[[gentamycin]]
*[[gentamycin]]
*[[GSK3-inhibitor IX (BIO)]]
*[[GM6001]]
*[[GM6001]]
*[[heptanol]]
*[[heptanol]]
*[[herbimycin A]]
*[[herbimycin A]]
*[[Hydroxyurea]]
*[[IBMX]]
*[[IBMX]]
*[[jasplakinolide]]
*[[6-B345TTQ]]
*[[KT 5720]]
*[[KT 5720]]
*[[L-NAME]]
*[[lansoprazole]]
*[[lansoprazole]]
*[[latrunculin B]]
*[[LDN-193189]]
*[[leucovorin]]
*[[LiCl]]
*[[LiCl]]
*[[LY294002]]
*[[methotrexate (MTX)]]
*[[metronidazole]]
*[[Mg132]]
*[[Mg132]]
*[[MMP-2 inhibitor II]]
*[[MMP-2 inhibitor II]]
*[[MS-275]]
*[[nicorandil]]
*[[nicorandil]]
*[[Nicotinamide]]
*[[Nicotinic acid]]
*[[nifedipine]]
*[[nifedipine]]
*[[nocodazole]]
*[[nocodazole]]
*[[NSC-87877]]
*[[NSC-87877]]
*[[o-phenanthroline]]
*[[o-phenanthroline]]
*[[okadaic acid]]
*[[olomoucine]]
*[[olomoucine]]
*[[ouabain]]
*[[ouabain]]
*[[PD173074]]
*[[PD-407824]]
*[[p-MPPI]]
*[[p-MPPI]]
*[[taxol|Paclitaxel]]
*[[phaclofen]]
*[[phaclofen]]
*[[Picropodophyllin]]
*[[PMA]]
*[[PMA]]
*[[PP2]]
*[[PP2]]
*[[primaquine]]
*[[primaquine]]
*[[propythiouracil]]
*[[Progesterone]]
*[[propylthiouracil]]
*[[pyrimethamine]]
*[[quinpirole]]
*[[rac1 inhibitor]]
*[[rapamycin]]
*[[retinoic acid]]
*[[retinoic acid]]
*[[Retinol]]
*[[RO-3306]]
*[[RS67333]]
*[[RS67333]]
*[[RU486]]
*[[RU486]]
*[[SAHA]]
*[[SB 203580]]
*[[SB 203580]]
*[[SB431542]]
*[[SB 505124]]
*[[SCH28080]]
*[[SNAP]]
*[[sodium nitroprusside]]
*[[sodium nitroprusside]]
*[[SP600125 ]]
*[[SP600125 ]]
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*[[SU6656]]
*[[SU6656]]
*[[Suramin]]
*[[Suramin]]
*[[tautomycin]]
*[[taxol]]
*[[thyroxine (T4)]]
*[[thyroxine (T4)]]
*[[Torin 2]]
*[[Trichostatin A]]
*[[trimetrexate]]
*[[TTNPB]]
*[[TTNPB]]
*[[Tubercidin]]
*[[tunicamycin]]
*[[tunicamycin]]
*[[Tyrphostin AG 1478]]
*[[U73122]]
*[[Y27632]]
*[[Y27632]]
*[[ZM 447439]]
*[[ZM 447439]]


The Following are in need of standardization and curation
*[[AM251]]
*[[AM281]]
*[[AP1510]]
*[[AR-A014418]]
*[[BHQ]]
*[[b-aminoproprionitrile]]
*[[beclomethasone]]
*[[Butyrate]]
*[[calcicludine]]
*[[Calyculin A]]
*[[celastrol]]
*[[celecoxib]]
*[[chromanol 293B]]
*[[chlorate]]
*[[cytochalasin D]]  
*[[cytochalasin D]]  
*[[latrunculin B]]
*[[colchicine]]
*[[colchicine]]
*[[AP1510]]
*[[dimethyloxallyl glycine (DMOG)]]
*[[U0126]]
*[[diclofenac]]
*[[etoposide]]
*[[IWR1]]
*[[GW843682X]]
*[[leptomycin B]]
*[[LY320135]]
*[[methylcellulose (MC)]]
*[[methimazole]]
*[[MBCD or MBetaCD]]
*[[MS222]]
*[[MS222]]
*[[nicardipine]]
*[[Nu6102]]
*[[phenylthiourea|phenylthiourea (PTU)]]
*[[purmorphamine]]
*[[Pyrazoleanthrone]]
*[[R(+)BayK 8644]]
*[[RHC80267]]
*[[RL-3]]
*[[SAG]]
*[[SB-431542]]
*[[SB-431542]]
*[[Nu6102]]
*[[TG003]]
*[[Thapsigargin]]
*[[U0126]]
*[[U73122]]
*[[ursodeoxycholic acid]]
*[[Echinomycin]]
*[[Gö 6983]]
*[[phenylhydrazine]]
*[[ω-conotoxin–GVIA]]
*[[flunarizine]]
*[[tetrodotoxin]]
*[[veratridine]]


==List of Molecules Affecting Specific Pathways==
==Small Molecules Affecting Pathways==
===cAMP===
===cAMP===
[[IBMX]]
*[[IBMX]]
*[[RU486]]
 
===CDK/Cyclins===
===CDK/Cyclins===
*[[olomoucine]]
*[[olomoucine]]
*[[RO-3306]]
===ERK/MAPK===
===ERK/MAPK===
*[[U0126]]
*[[U0126]]
===Folic Acid===
*[[Methotrexate (MTX)]]
===JAK/STAT===
===JAK/STAT===
*[[AZD1480]]
*[[AZD1480]]
===JNK===
===JNK===
[[SP600125]]
*[[SP600125]]
*[[Pyrazoleanthrone]]
 
===Nitric Oxide===
*[[sodium nitroprusside]]
 
===PDGF===
===PDGF===
*[[AG1296]]
*[[AG1296]]
*[[AP1510]]
*[[AP1510]]
===Retinoic Acid===
===Retinoic Acid===
*[[AGN193109]]
*[[AGN193109]]
*[[Citral]]
*[[retinoic acid]]
*[[retinoic acid]]
*[[Retinol]]
*[[TTNPB]]
*[[TTNPB]]
*[[BMS-453]]
===Shh===
===Shh===
*[[cyclopamine]]
*[[cyclopamine]]
*[[purmorphamine]]
*[[Vismodegib]]
===TGF-beta/BMP===
===TGF-beta/BMP===
*[[SB-431542]]
*[[SB-431542]]
*[[SB505124]]
===Thyroid Signaling===
*[[PTU]]
===Wnt===
===Wnt===
*[[LiCl]]
*[[LiCl]]
*[[GSK3-inhibitor IX (BIO)]]
*[[IWR1]]


===Epigenetics===
===Epigenetics===
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*[[GM6001|GM6001 (MMP inhibitor)]]
*[[GM6001|GM6001 (MMP inhibitor)]]
*[[o-phenanthroline|o-phenanthroline(MMP inhibitor)]]
*[[o-phenanthroline|o-phenanthroline(MMP inhibitor)]]
*[[BB-94|BB-94 MMP inhibitor]]
*[[GI254023X| GI254023X MMP10 inhibitor]]


==Small Molecules by Biological Function==
==Small Molecules affecting Biological Functions & Processes==
===Angiogenesis===
===Angiogenesis===
*[[dimethyloxallyl glycine (DMOG)]]
*[[herbimycin A]]
*[[herbimycin A]]
*[[Suramin]]


===Apoptosis===
===Apoptosis===
*[[cycloheximide]]
*[[cycloheximide]]
*[[alpha-amanitin]]
*[[alpha-amanitin]]
*[[Cyclosporin A]]
*[[2,2ʹ-Methylenebis(1,3-cyclohexanedione)]]
*[[NS3694]]


===Autophagy===
===Autophagy===
*[[LY-294002]]
*[[LY-294002]]
===Calcium Signaling===
*[[nifedipine]]
*[[R(+)BayK 8644]]
*[[nicardipine]]
*[[deltamethrin]]
*[[BHQ]]
*[[Thapsigargin]]
===Circadian Rhythm===
*[[quinpirole]]


===Cytoskeletal Inhibitors===
===Cytoskeletal Inhibitors===
*[[Cytochalasin B]]
*[[Cytochalasin B]]
 
*[[cytochalasin D]]
===Calcium Signaling===
*[[Colcemide]]
*[[nifedipine]]
*[[jasplakinolide]] is an activator
*[[latrunculin B]]
*[[taxol]]
*[[taxol|Paclitaxel]]


===Cell Cycle, including mitosis===
===Cell Cycle, including mitosis===
*[[Colcemide]]
*[[Hydroxyurea]]
*[[olomoucine]]
*[[olomoucine]]
*[[PD-407824]]
===Cilia===
*[[methylcellulose (MC)]]
===DNA Damage/Repair===
*[[etoposide]]
*[[Hydroxyurea]]
===DNA Synthesis===
*[[Calyculin A]]


===Growth Cone, Filopodia, and other Cytoskeletal projections===
===Growth Cone, Filopodia, and other Cytoskeletal projections===
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*[[colchicine]] 12.5uM Sigma
*[[colchicine]] 12.5uM Sigma
*[[nocodazole]] 0.1uM Sigma
*[[nocodazole]] 0.1uM Sigma
*[[RHC80267]]


===Hatching===
===Hatching===
*[[ouabain]]
*[[ouabain]]
===Left-Right Patterning===
*[[methylcellulose (MC)]]


===Metamorphosis===
===Metamorphosis===
*[[3,3,5-triiodothyronine (T3)]]
*[[3,3,5-triiodothyronine (T3)]]
*[[methimazole]]
*[[propylthiouracil]]
*[[thyroxine (T4)]]
*[[thyroxine (T4)]]


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*[[p-MPPI]]
*[[p-MPPI]]
*[[phaclofen]]
*[[phaclofen]]
*[[RS67333]]
*[[deltamethrin]]
===Protein Recycling===
*[[primaquine]]


==Drugs by Gene Class==
==Drugs by Gene Class==
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===Channels, including ATPases===
===Channels, including ATPases===
*[[ouabain]]
*[[ouabain]]
*[[AM251]]
*[[AM281]]
*[[LY320135]]
===G Protein Receptors===
===G Protein Receptors===
*[[purmorphamine]]
===Kinases===
===Kinases===
*[[KT 5720]]
*[[KT 5720]]
*[[olomoucine]]
*[[olomoucine]]
*[[PD-407824]]
*[[SB 203580]]
*[[Y27632]]
*[[ZM 447439]]
===Phosphatases===
*[[Cyclosporin A]]
*[[deltamethrin]]
*[[okadaic acid]]
*[[tautomycin]]
*[[Calyculin A]]


===Small GTPases===
===Small GTPases===
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*[[anisomycin]] 40uM Sigma
*[[anisomycin]] 40uM Sigma
*[[cycloheximide]] 40uM
*[[cycloheximide]] 40uM
===Retinoids===
*[[TTNPB]] Sigma


==Textpresso Small Molecules to Research==
==Textpresso Small Molecules to Research==
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*[http://www.xenbase.org/literature/article.do?method=display&articleId=42068 GBG or GBetaGamma or G Protein Beta Gamma]
*[http://www.xenbase.org/literature/article.do?method=display&articleId=42068 GBG or GBetaGamma or G Protein Beta Gamma]
*[[LY-294002| LY-294002 inhibits PI3K and autophagy]]
*[[LY-294002| LY-294002 inhibits PI3K and autophagy]]
==Models of Anemia==
*[[Phenylhydrazine]]

Revision as of 11:22, 9 April 2018

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Important small molecule references

Alphabetical List of Small Molecules With Literature References

The Following are in need of standardization and curation

Small Molecules Affecting Pathways

cAMP

CDK/Cyclins

ERK/MAPK

Folic Acid

JAK/STAT

JNK

Nitric Oxide

PDGF

Retinoic Acid

Shh

TGF-beta/BMP

Thyroid Signaling

Wnt

Epigenetics

Protease Inhibitors

Small Molecules affecting Biological Functions & Processes

Angiogenesis

Apoptosis

Autophagy

Calcium Signaling

Circadian Rhythm

Cytoskeletal Inhibitors

Cell Cycle, including mitosis

Cilia

DNA Damage/Repair

DNA Synthesis

Growth Cone, Filopodia, and other Cytoskeletal projections

Hatching

Left-Right Patterning

Metamorphosis

Neurotransmission

Protein Recycling

Drugs by Gene Class

Channels, including ATPases

G Protein Receptors

Kinases

Phosphatases

Small GTPases

Protein Synthesis

Retinoids

Textpresso Small Molecules to Research

Models of Anemia