XB-FEAT-971450: Difference between revisions

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=''slc25a20.2''=  
=''slc25a20l''=  
This is the community wiki page for the gene ''slc25a20.2'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase
This is the community wiki page for the gene ''slc25a20l'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase
 
=nomenclature changes=
15MAY2023
 
the ''Xenopus'' gene symbol changed from ''slc25a20.2'' to ''slc25a20l''
 
=synteny and orthology=
15MAY2023
 
''slc25a20'' v ''slc25a20-like''
 
true ''slc25a20'' on Chr 4 in ''Xenopus''
 
Xtr.Chr4:  ''ip6k2<  prkar2a<  '''slc25a20'''<  p4htm< frzb2> arlh2<''
 
Human Chr3:  IP6K2< PRKAR2A< '''SLC25A20'''< LOC > LOC> ARLH2> ARIH20S<
 
 
A 2nd gene annotated in v10 assembly as ''slc25a20'' is on Chr8 in ''Xenopus tropicalis'', represented here on XB-GENEPAGE-971450.
 
As it’s '''NOT''' a tandem duplication of true ''slc25a20'', thus it will be referred to as a 'like' gene , not as '.2/gene 2'.
 
This 2nd gene is not seen in conserved block/pattern in Human (although BLAST may ID another similar gene /loc).
 
 
Xtr.chr8:  ''rpl10>  dnase1l1< LOC116406574(dnase1l)< '''slc25a20l'''> LOC105945647(unch)< tafazzin>''
 
HUMAN:      RPL10>  DNASE1L1<    LOC124905228(UNCH)  TAFAZZIN>

Latest revision as of 14:41, 15 May 2023

slc25a20l

This is the community wiki page for the gene slc25a20l please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase

nomenclature changes

15MAY2023

the Xenopus gene symbol changed from slc25a20.2 to slc25a20l

synteny and orthology

15MAY2023

slc25a20 v slc25a20-like

true slc25a20 on Chr 4 in Xenopus

Xtr.Chr4: ip6k2< prkar2a< slc25a20< p4htm< frzb2> arlh2<

Human Chr3: IP6K2< PRKAR2A< SLC25A20< LOC > LOC> ARLH2> ARIH20S<


A 2nd gene annotated in v10 assembly as slc25a20 is on Chr8 in Xenopus tropicalis, represented here on XB-GENEPAGE-971450.

As it’s NOT a tandem duplication of true slc25a20, thus it will be referred to as a 'like' gene , not as '.2/gene 2'.

This 2nd gene is not seen in conserved block/pattern in Human (although BLAST may ID another similar gene /loc).


Xtr.chr8: rpl10> dnase1l1< LOC116406574(dnase1l)< slc25a20l> LOC105945647(unch)< tafazzin>

HUMAN: RPL10> DNASE1L1< LOC124905228(UNCH) TAFAZZIN>