XB-FEAT-971749: Difference between revisions
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The ‘cyp3a4’ genes are duplicated on Chromosome 5/5L in the X. tropicalis and X. laevis.L subgenome. They are missing from/not present in the X.laevis.S subgenome. | The ‘cyp3a4’ genes are duplicated on Chromosome 5/5L in the X. tropicalis and X. laevis.L subgenome. They are missing from/not present in the X.laevis.S subgenome. | ||
The synteny is conserved as follows: | The synteny is conserved as follows: | ||
Xtrop. Chr5: cyb5r4 | Xtrop. Chr5: '''cyb5r4''' ... x ... '''cyp3a4.2 ... cyp3a4.1''' ... ripply2.2 ... ripply2.1 ... snap91 | ||
XlaChr5L: '''cyb5r4.L'''... LOC#3092(another''cyp''reg.region) ... '''cyp3a4.2.L''' ... LoC#3716(tmpo) ... '''cyp3a4.1.L''' ... Loc#16888(dram1) ... ripply2.2.L ... ripply2.1.L ... snap91.L | |||
Xla.Chr5S: cyb5r4.S … x … x … x… x … x … ripply2.2 ... ripply2.1 ... snap91 | Xla.Chr5S: cyb5r4.S … x … x … x… x … x … ripply2.2 ... ripply2.1 ... snap91 | ||
Human chr7:CYP3A7… CYP3AP2 … '''CYP3A4''' … CYP3A4(5’reg.region) [ enhancers] CYP3A137P …CYP3A43 … | |||
Latest revision as of 14:52, 24 April 2023
cyp3a4.1
This is the community wiki page for the gene cyp3a4.1 please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase
synteny
The ‘cyp3a4’ genes are duplicated on Chromosome 5/5L in the X. tropicalis and X. laevis.L subgenome. They are missing from/not present in the X.laevis.S subgenome.
The synteny is conserved as follows:
Xtrop. Chr5: cyb5r4 ... x ... cyp3a4.2 ... cyp3a4.1 ... ripply2.2 ... ripply2.1 ... snap91
XlaChr5L: cyb5r4.L... LOC#3092(anothercypreg.region) ... cyp3a4.2.L ... LoC#3716(tmpo) ... cyp3a4.1.L ... Loc#16888(dram1) ... ripply2.2.L ... ripply2.1.L ... snap91.L
Xla.Chr5S: cyb5r4.S … x … x … x… x … x … ripply2.2 ... ripply2.1 ... snap91
Human chr7:CYP3A7… CYP3AP2 … CYP3A4 … CYP3A4(5’reg.region) [ enhancers] CYP3A137P …CYP3A43 …