XB-FEAT-1013836 - Revision history

Christina: /* nomenclature changes */

2023-06-06T16:58:45Z

nomenclature changes

← Older revision		Revision as of 16:58, 6 June 2023
Line 11:		Line 11:
	Most vertebrates groups have two INPPL1 genes but mammals have lost one of them (INPPL1B).		Most vertebrates groups have two INPPL1 genes but mammals have lost one of them (INPPL1B).

	XB ~~will create~~ a new genepage ~~on Xenbase~~ for ''inppl1b'' to include Xtrop GeneID: 100496685 and Xla.L GeneID: 108698315 .		XB created a new genepage XB-GENEPAGE-29071321 for ''inppl1b'' to include Xtrop GeneID: 100496685 and Xla.L GeneID: 108698315 .

	NB: There is '''no''' X.laevis ''inppl1b.S'' gene in the v10 assemblies/genome annotation		NB: There is '''no''' X.laevis ''inppl1b.S'' gene in the v10 assemblies/genome annotation

Christina: /* synteny patterns for INPPL1A/B in Vertebrates */

2023-04-25T15:19:00Z

synteny patterns for INPPL1A/B in Vertebrates

← Older revision		Revision as of 15:19, 25 April 2023
Line 58:		Line 58:


	~~rana~~ XP_040189969.1		Rana XP_040189969.1

	'''INPPL1'''> PHOX2A< CLPB<		'''INPPL1'''> PHOX2A< CLPB<


	~~microcacaelia~~ XP_030055838.1		Microcacaelia XP_030055838.1


Line 70:		Line 70:

	D. rerio NP_001034893.1		D. rerio NP_001034893.1


	SIK3/SIDT2< '''INPPL1A'''> PHOX2A< CLPB< LOC< folr< ANAPC15>		SIK3/SIDT2< '''INPPL1A'''> PHOX2A< CLPB< LOC< folr< ANAPC15>
Line 98:		Line 97:


	~~croc~~ XP_019391783.1[misnamed INPPL1], chelonia XP_043377770.1		crocodile XP_019391783.1[misnamed INPPL1], chelonia XP_043377770.1

	PDZD11> stard10-like< RAB41< ARR3< '''inppl1-like>''' P2RY4> dgat2< IGBP1<		PDZD11> stard10-like< RAB41< ARR3< '''inppl1-like>''' P2RY4> dgat2< IGBP1<

	~~Xtr~~ XP_031746720.1		Xtrop XP_031746720.1

	stard10-like< RAB41< ARR3< '''inppl1-like'''> P2RY4> DGAT2L6< IGBP1<		stard10-like< RAB41< ARR3< '''inppl1-like'''> P2RY4> DGAT2L6< IGBP1<
Line 111:		Line 110:


	~~microcacaelia~~ XP_030065653.1		Microcacaelia XP_030065653.1
	RAB41< '''inppl1-like>''' IGBP1<		RAB41< '''inppl1-like>''' IGBP1<


	~~protoperus~~ XP_043913229.1		Protoperus XP_043913229.1

	PDZD11> stard10-like< rab41< ARR3< ''inppl1-like>'' p2ry4< p2ry4>		PDZD11> stard10-like< rab41< ARR3< ''inppl1-like>'' p2ry4< p2ry4>

Christina: /* nomenlcature changes */

2023-04-25T15:18:09Z

nomenlcature changes

← Older revision		Revision as of 15:18, 25 April 2023
Line 2:		Line 2:
	This is the community wiki page for the gene ''inppl1a'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase.		This is the community wiki page for the gene ''inppl1a'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase.

	=~~nomenlcature~~ changes=		=nomenclature changes=
	09FEB2023		09FEB2023

Line 11:		Line 11:
	Most vertebrates groups have two INPPL1 genes but mammals have lost one of them (INPPL1B).		Most vertebrates groups have two INPPL1 genes but mammals have lost one of them (INPPL1B).

	we will ~~creat~~ a new genepage on Xenbase for ''inppl1b'' to include ~~Xtr~~ GeneID: 100496685 and Xla.L GeneID: 108698315 ~~. There is no inppl1b.S gene~~.		XB will create a new genepage on Xenbase for ''inppl1b'' to include Xtrop GeneID: 100496685 and Xla.L GeneID: 108698315 .

			NB: There is '''no''' X.laevis ''inppl1b.S'' gene in the v10 assemblies/genome annotation

	=synteny patterns for INPPL1A/B in Vertebrates=		=synteny patterns for INPPL1A/B in Vertebrates=

Christina: /* inppl1a */

2023-04-25T15:16:32Z

inppl1a

← Older revision		Revision as of 15:16, 25 April 2023
Line 1:		Line 1:
	=inppl1a=		=''inppl1a''=
	This is the community wiki page for the gene ''inppl1a'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase		This is the community wiki page for the gene ''inppl1a'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase.

	=nomenlcature changes=		=nomenlcature changes=

Christina: /* synteny patterns for INPPL1A/B in Vertebrates */

2023-02-09T17:01:09Z

synteny patterns for INPPL1A/B in Vertebrates

← Older revision		Revision as of 17:01, 9 February 2023
Line 57:		Line 57:


	rana XP_040189969.1 INPPL1> PHOX2A< CLPB<		rana XP_040189969.1

			'''INPPL1'''> PHOX2A< CLPB<


	microcacaelia XP_030055838.1		microcacaelia XP_030055838.1


	LAMTOR1< LOC> folr> '''INPPL1'''> PHOX2A< CLPB< STARD10>		LAMTOR1< LOC> folr> '''INPPL1'''> PHOX2A< CLPB< STARD10>
Line 66:		Line 69:

	D. rerio NP_001034893.1		D. rerio NP_001034893.1


	SIK3/SIDT2< '''INPPL1A'''> PHOX2A< CLPB< LOC< folr< ANAPC15>		SIK3/SIDT2< '''INPPL1A'''> PHOX2A< CLPB< LOC< folr< ANAPC15>

Christina: /* synteny patterns for INPPL1A/B in Vertebrates */

2023-02-09T17:00:36Z

synteny patterns for INPPL1A/B in Vertebrates

← Older revision		Revision as of 17:00, 9 February 2023
Line 39:		Line 39:
	GALLUS XM_040656636.1[PARTIAL], emu XP_025978297.1		GALLUS XM_040656636.1[PARTIAL], emu XP_025978297.1
	//'''''inppl1'''''>//		//'''''inppl1'''''>//


	chelonia XP_037769744.1		chelonia XP_037769744.1

	ANAPC15<folr3> folr1> folr2> '''INPPL1'''> PHOX2A< CLPB< STARD10>		ANAPC15<folr3> folr1> folr2> '''INPPL1'''> PHOX2A< CLPB< STARD10>


	podarcis XP_028581607.1		podarcis XP_028581607.1

	LAMTOR1< LOC> ANAPC15< folr> '''INPPL1'''> PHOX2A< CLPB< STARD10>		LAMTOR1< LOC> ANAPC15< folr> '''INPPL1'''> PHOX2A< CLPB< STARD10>



	Xtr XP_031753288.1		Xtr XP_031753288.1
Line 52:		Line 56:
	LAMTOR1< SFRPX> tomt< FOLR1> '''INPPL1'''> PHOX2A< CLPB<		LAMTOR1< SFRPX> tomt< FOLR1> '''INPPL1'''> PHOX2A< CLPB<

	~~rana XP_040189969.1~~

	INPPL1> PHOX2A< CLPB<		rana XP_040189969.1 INPPL1> PHOX2A< CLPB<


	microcacaelia XP_030055838.1		microcacaelia XP_030055838.1

	LAMTOR1< LOC> folr> '''INPPL1'''> PHOX2A< CLPB< STARD10>		LAMTOR1< LOC> folr> '''INPPL1'''> PHOX2A< CLPB< STARD10>


	D. rerio NP_001034893.1		D. rerio NP_001034893.1

Christina: /* inppl1 */

2023-02-09T16:59:58Z

inppl1

← Older revision		Revision as of 16:59, 9 February 2023
Line 1:		Line 1:
	=~~inppl1~~=		=inppl1a=
	This is the community wiki page for the gene ''~~inppl1~~'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase		This is the community wiki page for the gene ''inppl1a'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase

			=nomenlcature changes=
			09FEB2023

			''Xenopus'' gene name for XB-GENEPAGE-1013836 changed from ''inppl1, inositol polyphosphate phosphatase-like 1'' to ''inppl1a, inositol polyphosphate phosphatase-like 1a''

			this follows examination of INPPL1 genes in vertebrates.

			Most vertebrates groups have two INPPL1 genes but mammals have lost one of them (INPPL1B).

			we will creat a new genepage on Xenbase for ''inppl1b'' to include Xtr GeneID: 100496685 and Xla.L GeneID: 108698315 . There is no inppl1b.S gene.


			=synteny patterns for INPPL1A/B in Vertebrates=

			Source: DAVID WEBB @REFSEQ NCBI

			INPPL1 (aka INPPL1A)
			HUMAN: ANAPC15< FOLR3> FOLR1> FOLR2> '''INPPL1'''> PHOX2A< CLPB< PDE2A<


			MonDom

			ANAPC15<folr3> folr1> folr2> '''INPPL1'''> PHOX2A< CLPB< LOC<


			echidna XP_038620978.1

			LAMTOR1< ANAPC15< LOC< LOC> folr> '''INPPL1'''> PHOX2A< CLPB< LOC>


			Pheasant XP_031456985

			LAMTOR1< LOC> ANAPC15< folr> '''INPPL1'''> PHOX2A< CLPB<


			GALLUS XM_040656636.1[PARTIAL], emu XP_025978297.1
			//'''''inppl1'''''>//

			chelonia XP_037769744.1

			ANAPC15<folr3> folr1> folr2> '''INPPL1'''> PHOX2A< CLPB< STARD10>

			podarcis XP_028581607.1

			LAMTOR1< LOC> ANAPC15< folr> '''INPPL1'''> PHOX2A< CLPB< STARD10>

			Xtr XP_031753288.1

			LAMTOR1< SFRPX> tomt< FOLR1> '''INPPL1'''> PHOX2A< CLPB<

			rana XP_040189969.1

			INPPL1> PHOX2A< CLPB<

			microcacaelia XP_030055838.1

			LAMTOR1< LOC> folr> '''INPPL1'''> PHOX2A< CLPB< STARD10>

			D. rerio NP_001034893.1

			SIK3/SIDT2< '''INPPL1A'''> PHOX2A< CLPB< LOC< folr< ANAPC15>



			'''INPPL1B'''

			Human, koala

			PDZD11> RAB41< ARR3< '''P2RY4'''> AWAT1< DGAT2L6< IGBP1<


			platypus

			PDZD11> stard10-like< RAB41< ARR3< awat1< dgat2l6< IGBP1<


			Gallus XP_015133832.2

			PDZD11> stard10-like< RAB41< ARR3< "'''INNPL1'''"> P2RY4> AWAT1/dgat2< IGBP1<


			Pheasant XP_031449847.1, emu XP_025951802.1

			PDZD11> stard10-like< RAB41< ARR3< '''inppl1-like'''> P2RY4> dgat2< IGBP1<


			croc XP_019391783.1[misnamed INPPL1], chelonia XP_043377770.1

			PDZD11> stard10-like< RAB41< ARR3< '''inppl1-like>''' P2RY4> dgat2< IGBP1<

			Xtr XP_031746720.1

			stard10-like< RAB41< ARR3< '''inppl1-like'''> P2RY4> DGAT2L6< IGBP1<


			Rana XP_040190387.1
			ARR3< '''innpl1-like>''' p2ry4> loc< PDZD11<


			microcacaelia XP_030065653.1
			RAB41< '''inppl1-like>''' IGBP1<


			protoperus XP_043913229.1

			PDZD11> stard10-like< rab41< ARR3< ''inppl1-like>'' p2ry4< p2ry4>


			D.rerio INPPL1B NP_001034224.2

			ARR3B< '''INPPL1B >''' P2RY4> SOX3>

imported>Xenbase: /* inppl1 */Updated nomenclature, replaced: unnamed → inppl1 (2)

2017-12-15T22:06:44Z

inppl1: Updated nomenclature, replaced: unnamed → inppl1 (2)

← Older revision		Revision as of 22:06, 15 December 2017
Line 1:		Line 1:
	=~~unnamed~~=		=inppl1=
	This is the community wiki page for the gene ''~~unnamed~~'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase		This is the community wiki page for the gene ''inppl1'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase

imported>Xenbase gene generator at 12:00, 10 February 2010

2010-02-10T12:00:00Z

New page

=unnamed=
This is the community wiki page for the gene ''unnamed'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase