XB-FEAT-22067945 - Revision history

Xenbase: /* synteny */

2024-08-28T17:05:21Z

synteny

← Older revision		Revision as of 17:05, 28 August 2024
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	Xtrop v10		Xtrop v10
	Xtr.Chr6: ctnnb1> ulk4< trak1> LOC116411668(PYLa/PGLa A-like)>. LOC11641166790(PYLa/PGLa A-like)< LOC116411669(trak1-like). LOC100488640(xenopsin)< pgq<		Xtr.Chr6: ctnnb1> ulk4< trak1> LOC116411668(PYLa/PGLa A-like)>. LOC11641166790(PYLa/PGLa A-like)< LOC116411669(trak1-like). LOC100488640(xenopsin)< pgq<

			=orthology=

			It is not clear that there are any vertebrate orthologs for these genes, according to NCBI and EggNog6. AADACL3 (human mouse and rat)goes have been removed from this gene page accordingly, as we don't think they are orthologous to the pgla-genes here.

	=protein accessions used in COBALT=		=protein accessions used in COBALT=

Xenbase: /* nomenclature changes */

2024-03-28T18:49:06Z

nomenclature changes

@@ Line 4: / Line 4: @@
 =nomenclature changes=
 MARCH2024
-In the v10 ''X.laevis'' NCBI annotation, this gene was incorrectly called ''pgla.S'', but it '''is placed on chromosome 6L'''.  Synteny and the NCBI annotation name is as a prepro-PGLa, and as it falls adjacent to other prepro-PGLa genes, we have given it duplication suffix, 'gene 2'.  Therefore the gene name has changed from LOC780753 to ''pgla.2.L''.
+V10 gene symbols and (given names) '''before''' new nomenclature applied (see above for details)

Xenbase: Created page with "=''pgla.2''= This is the Xenbase wiki page for the Xenopus genes ''pgla.2''. Feel free to records here any information about these genes that is not captured elsewhere on Xenbase. =nomenclature changes= 28MARCH2024 In the v10 ''X.laevis'' NCBI annotation, this gene was incorrectly called ''pgla.S'', but it '''is placed on chromosome 6L'''. Synteny and the NCBI annotation name is as a prepro-PGLa, and as it falls adjacent to other prepro-PGLa genes, we have given it..."

2024-03-28T14:13:20Z

Created page with "=''pgla.2''= This is the Xenbase wiki page for the Xenopus genes ''pgla.2''. Feel free to records here any information about these genes that is not captured elsewhere on Xenbase. =nomenclature changes= 28MARCH2024 In the v10 ''X.laevis'' NCBI annotation, this gene was incorrectly called ''pgla.S'', but it '''is placed on chromosome 6L'''. Synteny and the NCBI annotation name is as a prepro-PGLa, and as it falls adjacent to other prepro-PGLa genes, we have given it..."

New page

=''pgla.2''=

This is the Xenbase wiki page for the Xenopus genes ''pgla.2''. Feel free to records here any information about these genes that is not captured elsewhere on Xenbase.

=nomenclature changes=

28MARCH2024

In the v10 ''X.laevis'' NCBI annotation, this gene was incorrectly called ''pgla.S'', but it '''is placed on chromosome 6L'''. Synteny and the NCBI annotation name is as a prepro-PGLa, and as it falls adjacent to other prepro-PGLa genes, we have given it duplication suffix, 'gene 2'. Therefore the gene name has changed from LOC780753 to ''pgla.2.L''.