XB-FEAT-29096946 - Revision history

Xenbase: /* orthology & synteny notes */

2026-05-06T13:39:35Z

orthology & synteny notes

← Older revision		Revision as of 13:39, 6 May 2026
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	=orthology & synteny notes=		=orthology & synteny notes=
			06MAY2026

	Synteny and BLAST support the true ATRAID orthologs in ''Xenopus'' as those on Chr.5/5S. THese models are here on XB-GENEPAGE-29096946.		Synteny and BLAST support the true ATRAID orthologs in ''Xenopus'' as those on Chr.5/5S. THese models are here on XB-GENEPAGE-29096946.

Xenbase: /* orthology & synteny notes */

2026-05-06T13:34:42Z

orthology & synteny notes

← Older revision		Revision as of 13:34, 6 May 2026
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	In ''X.laevis_ chr5S: _ppm1g< nrbp1> '''atraid'''< cad> uncn1> trim54<''		In ''X.laevis_ chr5S: _ppm1g< nrbp1> '''atraid'''< cad> uncn1> trim54<''

	In ''X. laevis'' 5L: ~~no gene model in v10~~		No gene model with this name in ''X.laevis'' v10, but BLAST Xtrop v Xlaevis, does match (~75% identity) _LOC108716076, sterile alpha motif domain-containing protein 12_, which is in the correct place in synteny-wise. Is this our ''atraid.L'' ?

			In ''X. laevis'' 5L: ''nrbp1.L> krtcap3.L> ift172.L< LOC121393878(a zfp) < '''LOC108716076<''' cad.L> MPV17.L> uncn1.S> trim54.S<''

	In ''X. tropicalis chr5: ppm1g< nrbp1> LOC> krtcap3> ift172< '''atraid<''' LOC< LOC< LOC< cad> mpv17> ucn> trim54<''		In ''X. tropicalis chr5: ppm1g< nrbp1> LOC> krtcap3> ift172< '''atraid<''' LOC< LOC< LOC< cad> mpv17> ucn> trim54<''

Xenbase: /* atraid */

2026-05-06T13:08:10Z

atraid

← Older revision		Revision as of 13:08, 6 May 2026
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	=''atraid''=		=''atraid''=
	This is the community wiki page for the gene ''atraid'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase.		This is the community wiki page for the gene ''atraid'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase.

			=orthology & synteny notes=
			Synteny and BLAST support the true ATRAID orthologs in ''Xenopus'' as those on Chr.5/5S. THese models are here on XB-GENEPAGE-29096946.

			In ''X.laevis_ chr5S: _ppm1g< nrbp1> '''atraid'''< cad> uncn1> trim54<''

			In ''X. laevis'' 5L: no gene model in v10

			In ''X. tropicalis chr5: ppm1g< nrbp1> LOC> krtcap3> ift172< '''atraid<''' LOC< LOC< LOC< cad> mpv17> ucn> trim54<''

			human: PRR30< TCF23> SLC5A6< '''ATRAID'''> CAD> SLC30A3< DNAJC5G>

			The 2nd '''atraid''' gene in ''Xenopus'' occurs on Xtr.chr8.

			I have renamed this "atraid-like" (''atraidl, all-trans retinoic acid induced differentiation factor like'') (although autocorrect would like to make it afraid, which has its charm).

			The protein sequence/BLAST does identify this chr8 pc gene as a true ATRAID member. If it occurs in other vertebrates, I have suggested to NCBI's David Webb that we might be able to sname it '''''atraid2'''''.

Xenbase: Created page with "=''atraid''= This is the community wiki page for the gene ''atraid'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase."

2026-05-05T15:06:15Z

Created page with "=''atraid''= This is the community wiki page for the gene ''atraid'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase."

New page

=''atraid''=
This is the community wiki page for the gene ''atraid'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase.