XB-FEAT-5995151 - Revision history

Christina: /* nomenclature changes */

2023-05-23T14:26:43Z

nomenclature changes

← Older revision		Revision as of 14:26, 23 May 2023
Line 19:		Line 19:

	we need to remove the Mammals ortholog from this page and add the gene IDs for ZebraFish: 560317 and 100151181		we need to remove the Mammals ortholog from this page and add the gene IDs for ZebraFish: 560317 and 100151181

			=orthology=
			The true SMAD10 orthologs are:

			Gg GeneID: 107055136 (was misnamed SMAD4 CGNC:78099)

			Xtr GeneID: 100188925 (was misnamed SMAD4.2 XB-GENE-5995152)

			Dr a Gene ID: 560317 (ZDB-GENE-060503-248)

			Dr b Gene ID: 100151181 (ZDB-GENE-110408-38)

	=synteny for ''smad10'' in vertebrates=		=synteny for ''smad10'' in vertebrates=

Christina: /* nomenclature changes */

2023-04-29T15:17:12Z

nomenclature changes

← Older revision		Revision as of 15:17, 29 April 2023
Line 14:		Line 14:

	following analysis by NCBI RefSeq curator, David Webb, this gene name has changed from smad4.2 to smad10, following nomenclature on fishes.		following analysis by NCBI RefSeq curator, David Webb, this gene name has changed from smad4.2 to smad10, following nomenclature on fishes.


			29APRIL2023

			we need to remove the Mammals ortholog from this page and add the gene IDs for ZebraFish: 560317 and 100151181

	=synteny for ''smad10'' in vertebrates=		=synteny for ''smad10'' in vertebrates=

Christina: /* synteny for smad10 in vertebrates */

2023-02-22T23:03:56Z

synteny for smad10 in vertebrates

Christina: /* synteny for smad10 in vertebrates */

2023-02-22T23:03:24Z

synteny for smad10 in vertebrates

← Older revision		Revision as of 23:03, 22 February 2023
Line 20:		Line 20:

	S100A14< S100A13< S100A1> CHTOP> SNAPIN> ILF2< NPR1<		S100A14< S100A13< S100A1> CHTOP> SNAPIN> ILF2< NPR1<
	~~''Italic text''~~
	Gg ( Chicken) GeneID: 107055136 XP_040508511.1
			Gg (Chicken) GeneID: 107055136 XP_040508511.1

	S100A14< S100A13< S100A1> CHTOP> '''"SMAD4"'''> SNAPIN> ILF2< npr1<		S100A14< S100A13< S100A1> CHTOP> '''"SMAD4"'''> SNAPIN> ILF2< npr1<

Christina: /* synteny for smad10 in vertebrates */

2023-02-22T23:03:00Z

synteny for smad10 in vertebrates

← Older revision		Revision as of 23:03, 22 February 2023
Line 17:		Line 17:
	=synteny for ''smad10'' in vertebrates=		=synteny for ''smad10'' in vertebrates=

	~~SMAD10~~		SMAD10Mammals (lost on mammals)
	~~Mammals~~
	S100A14< S100A13< S100A1> CHTOP> SNAPIN> ILF2< NPR1<		S100A14< S100A13< S100A1> CHTOP> SNAPIN> ILF2< NPR1<
			''Italic text''
			Gg ( Chicken) GeneID: 107055136 XP_040508511.1

	~~Gg GeneID: 107055136 XP_040508511.1~~		S100A14< S100A13< S100A1> CHTOP> '''"SMAD4"'''> SNAPIN> ILF2< npr1<
	S100A14< S100A13< S100A1> CHTOP> "SMAD4"> SNAPIN> ILF2< npr1<

	C.mydas GeneID:114021305 XP_037739145.1		C.mydas GeneID:114021305 XP_037739145.1
	S100A14< S100A13< S100A1> CHTOP> SMAD> SNAPIN> ILF2< NPR1<		S100A14< S100A13< S100A1> CHTOP> '''SMAD>''' SNAPIN> ILF2< NPR1<

	Podarcis XP_028565796.1		Podarcis XP_028565796.1
	S100A13< S100A1> CHTOP> smad> SNAPIN> ILF2< NPR1<		S100A13< S100A1> CHTOP> '''smad>''' SNAPIN> ILF2< NPR1<

	~~Xtr~~ GeneID: 100188925 XP_031747717.1 XB-GENE-5995152 [Xla GeneID: 403356]		Xtropicalis GeneID: 100188925 XP_031747717.1 XB-GENE-5995152 [Xla GeneID: 403356]
	S100A16< S100A13< S100A1> CHTOP> "SMAD4.2"> SNAPIN> ILF2< NPR1<		S100A16< S100A13< S100A1> CHTOP> "'''SMAD4.2'''"> SNAPIN> ILF2< NPR1<

	lungfish XP_043935901.1		lungfish XP_043935901.1
	s100a< s100a< s100a1> chtop> smad> SNAPIN> ILF2< NPR1<
			s100a< s100a< s100a1> chtop> '''smad>''' SNAPIN> ILF2< NPR1<

	reedfish GeneID: 114646771 XP_028650943.1		reedfish GeneID: 114646771 XP_028650943.1
	npr1< ilf2< CHTOPA< snapin> SMAD> gon4l> ca14<
			npr1< ilf2< CHTOPA< snapin> '''SMAD>''' gon4l> ca14<

	Dr Gene ID: 560317 ZDB-GENE-060503-248 NP_001352568.1		Dr Gene ID: 560317 ZDB-GENE-060503-248 NP_001352568.1
	PIMR92< MATCAP2< CHTOPA< SNAPIN> SMAD10A> SYT11A> RIT1> PEX11B>
			PIMR92< MATCAP2< CHTOPA< SNAPIN> '''SMAD10A>''' SYT11A> RIT1> PEX11B>

	Dr Gene ID: 100151181 ZDB-GENE-110408-38 XP_001922725.2		Dr Gene ID: 100151181 ZDB-GENE-110408-38 XP_001922725.2
	GPATCH4< GON4L< NPR1B< CHTOPB< SMAD10B> SYT11B> LOC> LOC< TRIM33L< DCST2<
			GPATCH4< GON4L< NPR1B< CHTOPB< '''SMAD10B>''' SYT11B> LOC> LOC< TRIM33L< DCST2<

	Flounder MN868432 QOJ43528.1= XP_019960855.1 Gene ID: 109641002		Flounder MN868432 QOJ43528.1= XP_019960855.1 Gene ID: 109641002
	GATAD2B> TXNIP< CHTOP< SNAPIN> SMAD10A> PEX11B> ILF2< ms4a#< sema4b< S100A14<
			GATAD2B> TXNIP< CHTOP< SNAPIN> '''SMAD10A'''> PEX11B> ILF2< ms4a#< sema4b< S100A14<

	flounder MN868433.1 QOJ43529.1= XP_019963807.1 Gene ID: 109643214		flounder MN868433.1 QOJ43529.1= XP_019963807.1 Gene ID: 109643214
	//tspan19/cd82< SMAD10b>//
			//tspan19/cd82< '''SMAD10b'''>//

	skate GeneID: 116968878 XP_032871745.1		skate GeneID: 116968878 XP_032871745.1
	GBA< chtop> SMAD> LOC> nitr12< TDRKH< sema7a< sema4b>
			GBA< chtop> '''SMAD'''> LOC> nitr12< TDRKH< sema7a< sema4b>

Christina: /* smad10 */

2023-02-22T23:00:40Z

smad10

@@ Line 1: / Line 1: @@
-=smad4.2=
+=''smad10''=
-This is the community wiki page for the gene ''smad4.2'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase
+This is the community wiki page for the gene ''smad10'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase
 ==Available Reagents==
 ===Morpholino Oligonucleotides===
 Morpholinos have been designed for this gene with sequences <br />
@@ Line 8: / Line 9: @@
 which were used in [http://www.xenbase.org/literature/article.do?method=display&articleId=7014]

imported>Kevin at 17:05, 13 November 2012

2012-11-13T17:05:00Z

← Older revision		Revision as of 17:05, 13 November 2012
Line 1:		Line 1:
	=smad4.2=		=smad4.2=
	This is the community wiki page for the gene ''smad4.2'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase		This is the community wiki page for the gene ''smad4.2'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase

			==Available Reagents==
			===Morpholino Oligonucleotides===
			Morpholinos have been designed for this gene with sequences <br />
			CGCCATCTTTTGCCCTTGTTGTTAC (5' UTR / translation blocking)<br />

			which were used in [http://www.xenbase.org/literature/article.do?method=display&articleId=7014]

imported>Xenbase gene generator at 12:00, 10 February 2010

2010-02-10T12:00:00Z

New page

=smad4.2=
This is the community wiki page for the gene ''smad4.2'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase

← Older revision		Revision as of 23:03, 22 February 2023
Line 25:		Line 25:

	S100A14< S100A13< S100A1> CHTOP> '''"SMAD4"'''> SNAPIN> ILF2< npr1<		S100A14< S100A13< S100A1> CHTOP> '''"SMAD4"'''> SNAPIN> ILF2< npr1<


	C.mydas GeneID:114021305 XP_037739145.1		C.mydas GeneID:114021305 XP_037739145.1
	S100A14< S100A13< S100A1> CHTOP> '''SMAD>''' SNAPIN> ILF2< NPR1<		S100A14< S100A13< S100A1> CHTOP> '''SMAD>''' SNAPIN> ILF2< NPR1<


	Podarcis XP_028565796.1		Podarcis XP_028565796.1
	S100A13< S100A1> CHTOP> '''smad>''' SNAPIN> ILF2< NPR1<		S100A13< S100A1> CHTOP> '''smad>''' SNAPIN> ILF2< NPR1<


	Xtropicalis GeneID: 100188925 XP_031747717.1 XB-GENE-5995152 [Xla GeneID: 403356]		Xtropicalis GeneID: 100188925 XP_031747717.1 XB-GENE-5995152 [Xla GeneID: 403356]
	S100A16< S100A13< S100A1> CHTOP> "'''SMAD4.2'''"> SNAPIN> ILF2< NPR1<		S100A16< S100A13< S100A1> CHTOP> "'''SMAD4.2'''"> SNAPIN> ILF2< NPR1<


	lungfish XP_043935901.1		lungfish XP_043935901.1

	s100a< s100a< s100a1> chtop> '''smad>''' SNAPIN> ILF2< NPR1<		s100a< s100a< s100a1> chtop> '''smad>''' SNAPIN> ILF2< NPR1<


	reedfish GeneID: 114646771 XP_028650943.1		reedfish GeneID: 114646771 XP_028650943.1

	npr1< ilf2< CHTOPA< snapin> '''SMAD>''' gon4l> ca14<		npr1< ilf2< CHTOPA< snapin> '''SMAD>''' gon4l> ca14<


	Dr Gene ID: 560317 ZDB-GENE-060503-248 NP_001352568.1		Dr Gene ID: 560317 ZDB-GENE-060503-248 NP_001352568.1

	PIMR92< MATCAP2< CHTOPA< SNAPIN> '''SMAD10A>''' SYT11A> RIT1> PEX11B>		PIMR92< MATCAP2< CHTOPA< SNAPIN> '''SMAD10A>''' SYT11A> RIT1> PEX11B>


	Dr Gene ID: 100151181 ZDB-GENE-110408-38 XP_001922725.2		Dr Gene ID: 100151181 ZDB-GENE-110408-38 XP_001922725.2

	GPATCH4< GON4L< NPR1B< CHTOPB< '''SMAD10B>''' SYT11B> LOC> LOC< TRIM33L< DCST2<		GPATCH4< GON4L< NPR1B< CHTOPB< '''SMAD10B>''' SYT11B> LOC> LOC< TRIM33L< DCST2<


	Flounder MN868432 QOJ43528.1= XP_019960855.1 Gene ID: 109641002		Flounder MN868432 QOJ43528.1= XP_019960855.1 Gene ID: 109641002

	GATAD2B> TXNIP< CHTOP< SNAPIN> '''SMAD10A'''> PEX11B> ILF2< ms4a#< sema4b< S100A14<		GATAD2B> TXNIP< CHTOP< SNAPIN> '''SMAD10A'''> PEX11B> ILF2< ms4a#< sema4b< S100A14<


	flounder MN868433.1 QOJ43529.1= XP_019963807.1 Gene ID: 109643214		flounder MN868433.1 QOJ43529.1= XP_019963807.1 Gene ID: 109643214

	//tspan19/cd82< '''SMAD10b'''>//		//tspan19/cd82< '''SMAD10b'''>//


	skate GeneID: 116968878 XP_032871745.1		skate GeneID: 116968878 XP_032871745.1

	GBA< chtop> '''SMAD'''> LOC> nitr12< TDRKH< sema7a< sema4b>		GBA< chtop> '''SMAD'''> LOC> nitr12< TDRKH< sema7a< sema4b>