XB-FEAT-956773 - Revision history

Christina: /* synteny and annotation notes */

2023-01-31T19:10:46Z

synteny and annotation notes

← Older revision		Revision as of 19:10, 31 January 2023
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	Based on synteny, protein alignmnet and phlogenetic analyses (COBALT run RID XJNBG46W212 (36 seqs)) of the protein coding sequences for all the v10 gene models annotations,		Based on synteny, protein alignmnet and phlogenetic analyses (COBALT run RID XJNBG46W212 (36 seqs)) of the protein coding sequences for all the v10 gene models annotations,
	several new models have been added to the ''cyp2a6'' Xenbase gene pages, and 2 more duplications have been identified between ''cyp2a6.1'' and ''axl'' in ''X. tropicalis''. To preserve the currenting naming scheme, and to avoid confusion, these newly annoatated gene models will be called ''cyp2a6.14'' and ''cyp2a6.15''. A 3rd newly annotated allele in Xtrop and Xlaevis.L is a cytochrome p450-related or cytochrome p450-like protein, but doesn't appear to be a cyp2a6 family member.		several new models have been added to the ''cyp2a6'' Xenbase gene pages, and 2 more duplications have been identified between ''cyp2a6.1'' and ''axl'' in ''X. tropicalis''. To preserve the currenting naming scheme, and to avoid confusion, these newly annoatated gene models will be called ''cyp2a6.14'' and ''cyp2a6.15''. A 3rd newly annotated allele in Xtrop (MGC69353) and Xlaevis.L (LOC108698627) is a cytochrome p450-related or cytochrome p450-like protein, according to DIOPT/EggNog homology grouping, but doesn't appear to be a ''cyp2a6'' family member.

Christina: /* synteny and annotation notes */

2023-01-31T19:07:49Z

synteny and annotation notes

@@ Line 5: / Line 5: @@
 JAN2023
-The cyp2a6 genes in ''Xenopus'' have undergone a series of tandem duplication events, resulting in at least 15 duplicated genes.
+The ''cyp2a6'' genes in ''Xenopus'' have undergone a series of tandem duplication events, resulting in at least 15 duplicated genes.
-All gene in the ''cyp2a6'' gene family are found on Chr8/8L/8S in ''Xenopus'', and are flanked by ''rab4b'' and ''egin2'' upstream, and ''axl'' and ''olfm4'' downstream.
+All genes in the ''cyp2a6'' gene family are found on Chr8/8L/8S in ''Xenopus'', and are flanked by ''rab4b'' and ''egin2'' nominally upstream, and ''axl'' and ''olfm4'' downstream.
-Based on synteny, protein alignmnet and phlogenetic analyses of the protein coding sequences for all the v10 gene models annotations,
+Based on synteny, protein alignmnet and phlogenetic analyses (COBALT run RID XJNBG46W212 (36 seqs)) of the protein coding sequences for all the v10 gene models annotations,
-several new models have been added to these Xenbase gene pages, and 2 more duplications have been named upstream of cyp2a6.1 (these will be called cyp2a6.14 and cyp2a6.15).
+several new models have been added to the ''cyp2a6'' Xenbase gene pages, and 2 more duplications have been identified between ''cyp2a6.1'' and ''axl'' in ''X. tropicalis''. To preserve the currenting naming scheme, and to avoid confusion, these newly annoatated gene models will be called ''cyp2a6.14'' and ''cyp2a6.15''. A 3rd newly annotated allele in Xtrop and Xlaevis.L is a cytochrome p450-related or cytochrome p450-like protein, but doesn't appear to be a cyp2a6 family member.

Christina: /* unnamed */

2023-01-31T18:54:46Z

unnamed

← Older revision		Revision as of 18:54, 31 January 2023
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	=~~unnamed~~=		=''cyp2a6.13''=
	This is the community wiki page for the gene ''~~unnamed~~'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase		This is the community wiki page for the gene ''cyp2a6.13'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase.

			=synteny and annotation notes=

			31JAN2023
			The cyp2a6 genes in ''Xenopus'' have undergone a series of tandem duplication events, resulting in at least 15 duplicated genes.

			All gene in the ''cyp2a6'' gene family are found on Chr8/8L/8S in ''Xenopus'', and are flanked by ''rab4b'' and ''egin2'' upstream, and ''axl'' and ''olfm4'' downstream.

			Based on synteny, protein alignmnet and phlogenetic analyses of the protein coding sequences for all the v10 gene models annotations,
			several new models have been added to these Xenbase gene pages, and 2 more duplications have been named upstream of cyp2a6.1 (these will be called cyp2a6.14 and cyp2a6.15).

imported>Xenbase gene generator at 12:00, 10 February 2010

2010-02-10T12:00:00Z

New page

=unnamed=
This is the community wiki page for the gene ''unnamed'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase