XB-FEAT-5945946: Difference between revisions
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= | =cxcl8b.2= | ||
This is the community wiki page for the gene '' | This is the community wiki page for the gene ''cxcl8b.2'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase | ||
=nomenclature changes= | |||
09.14.2021 | |||
Following review of this gene family by Leon Grayfer and his colleagues&students at George Washington University (with some additional input by Xenbase curators); 2 different clades of “cxcl8” genes/proteins have been described in Xenopus. See Hauser et al 2021 ( PubMed ID: 34489981 for more details) | |||
There are 2 gene groups within each clade, and all genes are orthologs of human CXCL8. | |||
''cxcl8a'' genes/proteins both '''have''' a ELR (inflammatory chemokine) motif, | |||
''cxcl8b'' genes/proteins '''lack''' the ELR motif. | |||
The following nomenclature changes have been made. | |||
1) XB-GENEPAGE-6257607 ( Entrez GeneIDs : 100498551 (X.trop); 100036815(Xla.L), 108706769(Xla.S) | |||
Gene symbol/gene name updated, changed from cxcl8a chemokine (C-X-C motif) ligand 8a to cxcl8a.1, C-X-C motif chemokine ligand 8a gene 1. | |||
2) XB-GENEPAGE-5945946 ( Entrez GeneIDs: 100498234 (Xtrop) ; 100037000 (Xla.L) (note there is no model for Xla.S) | |||
Gene symbol/ gene name updated, changed from “XB5945946 [provisional:cxcl8], provisional ortholog of C-X-C motif chemokine ligand 8” to “cxcl8b.2, C-X-C motif chemokine ligand 8b gene 2” | |||
3) New gene page has been requested for “cxcl8a.2, C-X-C motif chemokine ligand 8a gene 2” | |||
Entrez GeneIDs: 100498389 (Xtrop); 108711090* (Xla.L) ; 108706143** (Xla.S) | |||
Gene models: XBXT10g004080; gene47079, gene19170 | |||
Note that the previous names for these LOCs will also be updated: | |||
*LOC108711090 alveolar macrophage chemotactic factor Xenopus laevis (L)( gene47079) to cxcl8a.2.L | |||
**LOC108706143 alveolar macrophage chemotactic factor Xenopus laevis (S) (gene19170) to cxcl8a.2.S | |||
4) New gene page has been requested for “cxc8b.1, C-X-C motif chemokine ligand 8b gene 1” | |||
Entrez GeneIDs: 101730379 (Xtrop); 108711093* (Xla.L); 108706149**(Xla.S) | |||
Gene models:Xtropv9.1: gene5259; Xtropv10.1 XBXT10g011197; Xla.Lv9.2: gene35942; Xla.S v9.2 gene48128 | |||
Note that the previous names for these LOCs will also be updated: | |||
*LOC108711093 interleukin-8 (Xla.Lv9.2: gene35942) to cxc8b.1.L | |||
**LOC108706149 interleukin-8 (Xla.S gene48128) to cxc8b.1.S | |||
Latest revision as of 11:33, 14 September 2021
cxcl8b.2
This is the community wiki page for the gene cxcl8b.2 please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase
nomenclature changes
09.14.2021
Following review of this gene family by Leon Grayfer and his colleagues&students at George Washington University (with some additional input by Xenbase curators); 2 different clades of “cxcl8” genes/proteins have been described in Xenopus. See Hauser et al 2021 ( PubMed ID: 34489981 for more details)
There are 2 gene groups within each clade, and all genes are orthologs of human CXCL8.
cxcl8a genes/proteins both have a ELR (inflammatory chemokine) motif, cxcl8b genes/proteins lack the ELR motif.
The following nomenclature changes have been made.
1) XB-GENEPAGE-6257607 ( Entrez GeneIDs : 100498551 (X.trop); 100036815(Xla.L), 108706769(Xla.S)
Gene symbol/gene name updated, changed from cxcl8a chemokine (C-X-C motif) ligand 8a to cxcl8a.1, C-X-C motif chemokine ligand 8a gene 1.
2) XB-GENEPAGE-5945946 ( Entrez GeneIDs: 100498234 (Xtrop) ; 100037000 (Xla.L) (note there is no model for Xla.S)
Gene symbol/ gene name updated, changed from “XB5945946 [provisional:cxcl8], provisional ortholog of C-X-C motif chemokine ligand 8” to “cxcl8b.2, C-X-C motif chemokine ligand 8b gene 2”
3) New gene page has been requested for “cxcl8a.2, C-X-C motif chemokine ligand 8a gene 2”
Entrez GeneIDs: 100498389 (Xtrop); 108711090* (Xla.L) ; 108706143** (Xla.S)
Gene models: XBXT10g004080; gene47079, gene19170
Note that the previous names for these LOCs will also be updated:
- LOC108711090 alveolar macrophage chemotactic factor Xenopus laevis (L)( gene47079) to cxcl8a.2.L
- LOC108706143 alveolar macrophage chemotactic factor Xenopus laevis (S) (gene19170) to cxcl8a.2.S
4) New gene page has been requested for “cxc8b.1, C-X-C motif chemokine ligand 8b gene 1”
Entrez GeneIDs: 101730379 (Xtrop); 108711093* (Xla.L); 108706149**(Xla.S)
Gene models:Xtropv9.1: gene5259; Xtropv10.1 XBXT10g011197; Xla.Lv9.2: gene35942; Xla.S v9.2 gene48128
Note that the previous names for these LOCs will also be updated:
- LOC108711093 interleukin-8 (Xla.Lv9.2: gene35942) to cxc8b.1.L
- LOC108706149 interleukin-8 (Xla.S gene48128) to cxc8b.1.S