XB-FEAT-983566: Difference between revisions

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This is the community wiki page for the gene ''opn8'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase
This is the community wiki page for the gene ''opn8'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase


=summary for human OPN5 form NCBI=
=summary for human OPN8 form NCBI=
 
Opsins are members of the guanine nucleotide-binding protein (G protein)-coupled receptor superfamily. This opsin gene is expressed in the eye, brain, testes, and spinal cord. This gene belongs to the seven-exon subfamily of mammalian opsin genes that includes peropsin (RRH) and retinal G protein coupled receptor (RGR). Like these other seven-exon opsin genes, this family member may encode a protein with photoisomerase activity. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jun 2010]
 


=nomenclature changes=
=nomenclature changes=
2020/06/04
06/04/2020
Human symbol has changed for genepage ID: 983566 From opn8 to OPN5
Human symbol has changed for genepage ID: 983566 From opn8 to OPN5


''Xenopus'' symbol has changed for genepage ID: 983566 From ''opn8'' to ''onp5''
''Xenopus'' symbol has changed for genepage ID: 983566 From ''opn8'' to ''onp5''
08/20/2020
Correction- this is opn8 afterall, it was changed in error, as the human ortholog links were incorrect.
XB-GENEPAGE-983566 represents an opn5-like gene that seems to have been lost in mammals and is usually situated near MMUT and CDC5L from gnathostomes to reptiles but the neighboring genes are quite variable.
MMUT> '''OPN5-like'''<  CDC5L>
I believe XB-GENEPAGE-983566 represents the ortholog to ''opn8a/b'' seen in zebrafish (see Gene ID: 100002138) or reedfish Gene ID: 114647660) and thus reverted to ''opn8'' in ''Xenopus''

Latest revision as of 16:32, 20 August 2020

opn8

This is the community wiki page for the gene opn8 please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase

summary for human OPN8 form NCBI

nomenclature changes

06/04/2020 Human symbol has changed for genepage ID: 983566 From opn8 to OPN5

Xenopus symbol has changed for genepage ID: 983566 From opn8 to onp5

08/20/2020 Correction- this is opn8 afterall, it was changed in error, as the human ortholog links were incorrect.

XB-GENEPAGE-983566 represents an opn5-like gene that seems to have been lost in mammals and is usually situated near MMUT and CDC5L from gnathostomes to reptiles but the neighboring genes are quite variable.

MMUT> OPN5-like< CDC5L>

I believe XB-GENEPAGE-983566 represents the ortholog to opn8a/b seen in zebrafish (see Gene ID: 100002138) or reedfish Gene ID: 114647660) and thus reverted to opn8 in Xenopus

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