XB-FEAT-22068624: Difference between revisions
Created page with "= ''fndc3c1l'' = This is the community wiki page for the gene ''fndc3c1l'' please feel free to add any information that is relevant to this gene that is not already captured..." |
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=orthology analysis= | =orthology analysis= | ||
04JAN2023 | 04JAN2023 | ||
NCBI Reference Sequence: XP_031755143.1, uncharacterized protein LOC101733873 [Xenopus tropicalis] | NCBI Reference Sequence: XP_031755143.1, uncharacterized protein LOC101733873 [Xenopus tropicalis] | ||
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CTLCTSQRADQSLSLQNTIRNDFIRDFYLQDV | CTLCTSQRADQSLSLQNTIRNDFIRDFYLQDV | ||
DIOPTs EggNoggtool, which searches protien sequences to determine orthology groups, gives only a few results for LOC101733873, grouping this protein with Fndc3c1 and Fnd3c2 (fibronectin type III domain containing 3C1) in Mouse and rat and 24 other species ( not all accession had gene symbols). | Using DIOPTs EggNoggtool, which searches protien sequences to determine orthology groups, gives only a few results (with weak-moderate support) for LOC101733873, grouping this protein with Fndc3c1 and Fnd3c2 (fibronectin type III domain containing 3C1) in Mouse and rat and 24 other species ( not all accession had gene symbols). | ||
Functionally, Mouse fndc3c1 is 'predicted to be integral component of membrane'. | Functionally, Mouse fndc3c1 is 'predicted to be integral component of membrane'. | ||
Note that NCBI has 982 genes/proteins with this 'fibroin heavy chain-like ' name, but all have loc# symbols; fibrobrin is a silk protein in moths, FIBH, so thats the insect gene. | Note that NCBI has 982 genes/proteins with this 'fibroin heavy chain-like ' name, but all have loc# symbols; fibrobrin is a silk protein in moths, FIBH, so thats the insect gene. | ||
Latest revision as of 13:44, 4 January 2023
fndc3c1l
This is the community wiki page for the gene fndc3c1l please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase.
nomenclature changes
04JAN2023 name changes based on provisional analysis of protein sequence below:
gene name updated /changed from fibroin heavy chain-like to fibronectin type III domain containing 3C1 like
gene symbol changed from XB22068624 to fndc3c1l
orthology analysis
04JAN2023
NCBI Reference Sequence: XP_031755143.1, uncharacterized protein LOC101733873 [Xenopus tropicalis]
protein sequence used:
MRDTNNKWLIYKNGGLYAKELNNANLHLRAPIEVTTYGSLVTVNLNISSITEILPNSSIADCLPCTSVTESLPNSSIADCLPCTSVTESL PNSSIADCLPCTSVTESLPNSSIADCLPCTSVTESLPNSSITNCLPCTSVTESWPCNLITESRHYIALTESRHCIALTESLHNSSITDCL PNSSITDSLPNSSITESLSITESLSALYIAFSILDTNSQKRIFLYSSSGTLEYKKLDAIPPSVSGDNVNLLFSTTQQTHTATYVPINYSQ CTLCTSQRADQSLSLQNTIRNDFIRDFYLQDV
Using DIOPTs EggNoggtool, which searches protien sequences to determine orthology groups, gives only a few results (with weak-moderate support) for LOC101733873, grouping this protein with Fndc3c1 and Fnd3c2 (fibronectin type III domain containing 3C1) in Mouse and rat and 24 other species ( not all accession had gene symbols).
Functionally, Mouse fndc3c1 is 'predicted to be integral component of membrane'.
Note that NCBI has 982 genes/proteins with this 'fibroin heavy chain-like ' name, but all have loc# symbols; fibrobrin is a silk protein in moths, FIBH, so thats the insect gene.