XB-FEAT-22168683: Difference between revisions
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There are two tandem copies of the ''X. tropicalis'' 'acrbp' gene om Chr7, which are called ''acrbp'' and ''acrbp.3'' | |||
Xtrop Chr7: ''c7h10orf88> cuzd1> ''acrbp>'' ''acrbp.3>'' ctbp2< zranb1< abraxas2<'' | |||
There is another string of 3 acrbp-like on Chr7: LOC101735301> acrbpl> LOC116412453 | |||
There is another string of 3 '''acrbp-like''' on Xtrop.Chr7: LOC101735301> acrbpl> LOC116412453 | |||
These have been named as follows: | These have been named as follows: | ||
acrbpl acrosin binding protein like gene 1, with synonym acrbpl.1 XB-GENEPAGE-6044818 | acrbpl acrosin binding protein like gene 1, with synonym acrbpl.1 XB-GENEPAGE-6044818 (note we are ommiting .1 suffix to avoid ocnfusion with orthologs and symbol matching) | ||
acrbpl.2 acrosin binding protein like gene 2: LOC101735301, GeneID:101735301 (new gene page requested) | acrbpl.2 acrosin binding protein like gene 2: LOC101735301, GeneID:101735301 (new gene page requested) | ||
acrbpl.3 acrosin binding protein like gene 3: LOC116412453, geneID:116412453 (new gene page requested) | acrbpl.3 acrosin binding protein like gene 3: LOC116412453, geneID:116412453 (new gene page requested) | ||
=Synteny= | =Synteny= | ||
Xtrop Chr7: c7h10orf88> cuzd1> | Xtrop Chr7: c7h10orf88> cuzd1> '''acrbp> acrbp.3>''' ctbp2< zranb1< abraxas2< | ||
Xtrop Chr7: slc16a9< | Xtrop Chr7: slc16a9< .... '''LOC101735301|acrbp-like(.2)> .... acrbpl> ... LOC116412453|acrbp-like(.3)''' ... ccdc6< ... actrt2< ... ank3< | ||
Zfish: mrin< ccdc6< LOC#ncRNA < ank3< | Zfish: mrin< ccdc6< LOC#ncRNA < ank3< | ||
Latest revision as of 11:50, 17 April 2023
acrbp
There are two tandem copies of the X. tropicalis 'acrbp' gene om Chr7, which are called acrbp and acrbp.3
Xtrop Chr7: c7h10orf88> cuzd1> acrbp> acrbp.3> ctbp2< zranb1< abraxas2<
There is another string of 3 acrbp-like on Xtrop.Chr7: LOC101735301> acrbpl> LOC116412453
These have been named as follows:
acrbpl acrosin binding protein like gene 1, with synonym acrbpl.1 XB-GENEPAGE-6044818 (note we are ommiting .1 suffix to avoid ocnfusion with orthologs and symbol matching) acrbpl.2 acrosin binding protein like gene 2: LOC101735301, GeneID:101735301 (new gene page requested) acrbpl.3 acrosin binding protein like gene 3: LOC116412453, geneID:116412453 (new gene page requested)
Synteny
Xtrop Chr7: c7h10orf88> cuzd1> acrbp> acrbp.3> ctbp2< zranb1< abraxas2<
Xtrop Chr7: slc16a9< .... LOC101735301|acrbp-like(.2)> .... acrbpl> ... LOC116412453|acrbp-like(.3) ... ccdc6< ... actrt2< ... ank3<
Zfish: mrin< ccdc6< LOC#ncRNA < ank3<
Synteny not conserved with Chicken.
Gallus: TMTC1> LOC#9051> ACRBPL< DDX11? WASHC1<