XB-FEAT-5888885: Difference between revisions
imported>Xenbase gene generator No edit summary |
|||
| (2 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
= | =''zp3''= | ||
This is the community wiki page for the gene '' | This is the community wiki page for the gene ''zp3'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase. | ||
=nomeclature updates= | |||
''Xenopus'' gene name changed from ''provisional ortholog of zona pellucida glycoprotein 3'' to ''zona pellucida glycoprotein 3'' | |||
''Xenopus'' gene symbol- from zp3 [provisional] to ''zp3'' | |||
=orthology= | |||
DIOPT/EggNog analysis of teh Xtrop protein NP_988853.1 matches the ZP3 gens in > 200 proteins from >100 species, including reptiles, fish and Xenopus (Silurana) 2 seqs 8364.ENSXETP00000042178, 8364.ENSXETP00000042176 LOC394444, zp3, and Homo sapiens2 seqs 9606.ENSP00000309233, 9606.ENSP00000378326 POMZP3, ZP3 | |||
This is good evidence that this is the true ZP3 ortholog! | |||
=protein accession used in orthology tool= | |||
>NP_988853.1 provisional ortholog of zona pellucida glycoprotein 3 precursor [Xenopus tropicalis] | |||
MRQLGRLNVLLLVLLGPVYALAHSVSSERSRRQGSQWWQDYHSVVSNYGPSRGTNGLGFGSRQLPGSPQN | |||
TVSVRCNEDKMVVTVQTDLYGIGKNIKASDLTLGPQRCPPSAPQSTSTAVVFQVNLQDCGNSLQMTPNFL | |||
VYSTNLTYAPAPRNVPIIRMNGAKVLIQCFYPRNGNVSSKAIKPTWVPFSSTISAEDRLAFSLRLMTDDW | |||
SAPRASNVFQLGDVFHIEASINIANHAPMTIYVDSCVATVAPDVNSNPRYEIINQNGCLVDGKQDDSSSA | |||
FRSPRTQPDKLQFSVDAFRFTTTDASVIYITCNLRAAAATQVPDTMNKACSFSKSANSWSPLQGPSNICS | |||
CCDAGNCVSVPSQSRRLGPYFSGSRWNRKREAVHVSKMEEEEHSLATLGPILVVTPEYTQTQALKQEPES | |||
KTLELWELLALGSLGLVVLAGCVAVVATKLMKRKQYVSTIQK | |||
Latest revision as of 12:37, 26 April 2023
zp3
This is the community wiki page for the gene zp3 please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase.
nomeclature updates
Xenopus gene name changed from provisional ortholog of zona pellucida glycoprotein 3 to zona pellucida glycoprotein 3
Xenopus gene symbol- from zp3 [provisional] to zp3
orthology
DIOPT/EggNog analysis of teh Xtrop protein NP_988853.1 matches the ZP3 gens in > 200 proteins from >100 species, including reptiles, fish and Xenopus (Silurana) 2 seqs 8364.ENSXETP00000042178, 8364.ENSXETP00000042176 LOC394444, zp3, and Homo sapiens2 seqs 9606.ENSP00000309233, 9606.ENSP00000378326 POMZP3, ZP3
This is good evidence that this is the true ZP3 ortholog!
protein accession used in orthology tool
>NP_988853.1 provisional ortholog of zona pellucida glycoprotein 3 precursor [Xenopus tropicalis] MRQLGRLNVLLLVLLGPVYALAHSVSSERSRRQGSQWWQDYHSVVSNYGPSRGTNGLGFGSRQLPGSPQN TVSVRCNEDKMVVTVQTDLYGIGKNIKASDLTLGPQRCPPSAPQSTSTAVVFQVNLQDCGNSLQMTPNFL VYSTNLTYAPAPRNVPIIRMNGAKVLIQCFYPRNGNVSSKAIKPTWVPFSSTISAEDRLAFSLRLMTDDW SAPRASNVFQLGDVFHIEASINIANHAPMTIYVDSCVATVAPDVNSNPRYEIINQNGCLVDGKQDDSSSA FRSPRTQPDKLQFSVDAFRFTTTDASVIYITCNLRAAAATQVPDTMNKACSFSKSANSWSPLQGPSNICS CCDAGNCVSVPSQSRRLGPYFSGSRWNRKREAVHVSKMEEEEHSLATLGPILVVTPEYTQTQALKQEPES KTLELWELLALGSLGLVVLAGCVAVVATKLMKRKQYVSTIQK