XB-FEAT-5914874: Difference between revisions
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=cplane2= | =''cplane2''= | ||
This is the community wiki page for the gene ''cplane2'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase. | This is the community wiki page for the gene ''cplane2'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase. | ||
=nomenclature changes= | =nomenclature changes= | ||
02.04.2018 | 02.04.2018 | ||
Human symbol has changed for genepage ID: 5914874 From rsg1 to cplane2 | Human symbol has changed for genepage ID: 5914874 From rsg1 to cplane2 | ||
3/28/2018 | |||
Human symbol has changed for genepage ID: 5914874 From rsg1 to cplane2 | |||
Human symbol has changed for Entrez Gene: 79363. From RSG1 to CPLANE2 | |||
Human name has changed for Entrez Gene: 79363. From REM2 and RAB like small GTPase 1 to | |||
ciliogenesis and planar polarity effector 2 | |||
10MAY2023 | |||
Based on sequence alignment, BLAST and synteny analysis, ''cplane2l.S'' ( on ''X. laevis'' chrome7S) is believed to be the true ortholog of for CPLANE2, so the gene model will be moved to this gene page and renamed ''cplane2.S'', removing the '-like' suffix. | |||
=synteny and orthology= | |||
cplane2 in vertebrates: | |||
Human: Chr1: ARHGEF19< LOC> LOC> ANOL7L1< LOC> LOC> '''CPLANE2<''' MT1XP1< FBXO42< | |||
MOUS:E CHR4: Szrd1< Fbxo42> '''Cplane2>''' Arhgef19> | |||
Zfish Chr6: synprb< cadpsb> '''cplane2>''' wdr82> mirletj7> LOC#(ncRNA)< twf2> | |||
''X.tropicalis'' Chr7: ldlrad2> hspg2< '''cplane2<''' LOC116412403(actinlpb6> LOC116412404(Gtf2ird1l)> | |||
''X.laevis'' '''Chr7L''': ldlrad2.L> hspg2.L< '''cplane2.L<''' LOC108696832(srcf#)> fbxo42.L> | |||
''Xlaevis'' '''Chr7S''': rap1gap.S> cela3a.S< ldlrad2.S> LOC108697851(lncRNA)< fbxo42.S< | |||
(NB: CPLANE2 ORTHOLOG NOT PRESENT on Xla.chr7S) | |||
cplane2-like in ''Xenopus'' | |||
''X. tropicalis'' Chr9 rv: XB5836725(unch) LOC101731603(cytospin-A-like) elob< pkmyt1> paqr4< kremen2< | |||
''X. laevis'' '''Chr9_10L''': > [3 olfactory receptors LOC> LOC> LOC>] LOC121398199< LOC#(UNCH)> LOC108701723(cytospin-A)< elob.L< pkmyt1.L> paqr4.L< kremen2.L< | |||
''X. laevis'' '''Chr9_10S:''': [3 olfactory receptors LOC> LOC> LOC>] '''cplane2-like.S>''' < LOC#3268(smtnl1)> LOC#69(elob)< pkmyt1.S> paqr4.S< kremen2.S< | |||
Latest revision as of 12:04, 10 May 2023
cplane2
This is the community wiki page for the gene cplane2 please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase.
nomenclature changes
02.04.2018 Human symbol has changed for genepage ID: 5914874 From rsg1 to cplane2
3/28/2018
Human symbol has changed for genepage ID: 5914874 From rsg1 to cplane2
Human symbol has changed for Entrez Gene: 79363. From RSG1 to CPLANE2
Human name has changed for Entrez Gene: 79363. From REM2 and RAB like small GTPase 1 to ciliogenesis and planar polarity effector 2
10MAY2023
Based on sequence alignment, BLAST and synteny analysis, cplane2l.S ( on X. laevis chrome7S) is believed to be the true ortholog of for CPLANE2, so the gene model will be moved to this gene page and renamed cplane2.S, removing the '-like' suffix.
synteny and orthology
cplane2 in vertebrates:
Human: Chr1: ARHGEF19< LOC> LOC> ANOL7L1< LOC> LOC> CPLANE2< MT1XP1< FBXO42<
MOUS:E CHR4: Szrd1< Fbxo42> Cplane2> Arhgef19>
Zfish Chr6: synprb< cadpsb> cplane2> wdr82> mirletj7> LOC#(ncRNA)< twf2>
X.tropicalis Chr7: ldlrad2> hspg2< cplane2< LOC116412403(actinlpb6> LOC116412404(Gtf2ird1l)>
X.laevis Chr7L: ldlrad2.L> hspg2.L< cplane2.L< LOC108696832(srcf#)> fbxo42.L>
Xlaevis Chr7S: rap1gap.S> cela3a.S< ldlrad2.S> LOC108697851(lncRNA)< fbxo42.S<
(NB: CPLANE2 ORTHOLOG NOT PRESENT on Xla.chr7S)
cplane2-like in Xenopus
X. tropicalis Chr9 rv: XB5836725(unch) LOC101731603(cytospin-A-like) elob< pkmyt1> paqr4< kremen2<
X. laevis Chr9_10L: > [3 olfactory receptors LOC> LOC> LOC>] LOC121398199< LOC#(UNCH)> LOC108701723(cytospin-A)< elob.L< pkmyt1.L> paqr4.L< kremen2.L<
X. laevis Chr9_10S:: [3 olfactory receptors LOC> LOC> LOC>] cplane2-like.S> < LOC#3268(smtnl1)> LOC#69(elob)< pkmyt1.S> paqr4.S< kremen2.S<