XB-FEAT-971450: Difference between revisions
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= | =''slc25a20l''= | ||
This is the community wiki page for the gene '' | This is the community wiki page for the gene ''slc25a20l'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase | ||
=nomenclature changes= | |||
15MAY2023 | |||
the ''Xenopus'' gene symbol changed from ''slc25a20.2'' to ''slc25a20l'' | |||
=synteny and orthology= | |||
15MAY2023 | |||
''slc25a20'' v ''slc25a20-like'' | |||
true ''slc25a20'' on Chr 4 in ''Xenopus'' | |||
Xtr.Chr4: ''ip6k2< prkar2a< '''slc25a20'''< p4htm< frzb2> arlh2<'' | |||
Human Chr3: IP6K2< PRKAR2A< '''SLC25A20'''< LOC > LOC> ARLH2> ARIH20S< | |||
A 2nd gene annotated in v10 assembly as ''slc25a20'' is on Chr8 in ''Xenopus tropicalis'', represented here on XB-GENEPAGE-971450. | |||
As it’s '''NOT''' a tandem duplication of true ''slc25a20'', thus it will be referred to as a 'like' gene , not as '.2/gene 2'. | |||
This 2nd gene is not seen in conserved block/pattern in Human (although BLAST may ID another similar gene /loc). | |||
Xtr.chr8: ''rpl10> dnase1l1< LOC116406574(dnase1l)< '''slc25a20l'''> LOC105945647(unch)< tafazzin>'' | |||
HUMAN: RPL10> DNASE1L1< LOC124905228(UNCH) TAFAZZIN> | |||
Latest revision as of 13:41, 15 May 2023
slc25a20l
This is the community wiki page for the gene slc25a20l please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase
nomenclature changes
15MAY2023
the Xenopus gene symbol changed from slc25a20.2 to slc25a20l
synteny and orthology
15MAY2023
slc25a20 v slc25a20-like
true slc25a20 on Chr 4 in Xenopus
Xtr.Chr4: ip6k2< prkar2a< slc25a20< p4htm< frzb2> arlh2<
Human Chr3: IP6K2< PRKAR2A< SLC25A20< LOC > LOC> ARLH2> ARIH20S<
A 2nd gene annotated in v10 assembly as slc25a20 is on Chr8 in Xenopus tropicalis, represented here on XB-GENEPAGE-971450.
As it’s NOT a tandem duplication of true slc25a20, thus it will be referred to as a 'like' gene , not as '.2/gene 2'.
This 2nd gene is not seen in conserved block/pattern in Human (although BLAST may ID another similar gene /loc).
Xtr.chr8: rpl10> dnase1l1< LOC116406574(dnase1l)< slc25a20l> LOC105945647(unch)< tafazzin>
HUMAN: RPL10> DNASE1L1< LOC124905228(UNCH) TAFAZZIN>