XB-FEAT-29071321: Difference between revisions
Created page with "=''inpp1b''= This is the community wiki page for the gene ''inpp1b'' please feel free to add any information that is relevant to this gene that is not already captured elsewh..." |
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='' | =''inppl1b''= | ||
This is the community wiki page for the gene '' | This is the community wiki page for the gene ''inppl1b'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase. | ||
=nomenclature changes= | |||
Vertebrates have two INPPL1 genes, but mammals have lost one of them (INPPL1B). | |||
ZFIN correctly recognizes INPPL1A and INNPL1B in Zebrafish. The orthologous gene names and symbols in Xenopus and chicken were updated accordingly. | |||
XB-GENEPAGE-1013836 (GeneIDs:100485745, 108708768, no inppl1a.S) changed from ''inppl1'', to inppl1a/ ’inositol polyphosphate phosphatase-like 1a’ | |||
Created this XB-GENEPAGE for ''inppl1b, inositol polyphosphate phosphatase-like 1B'' that includes Xtr GeneID: 100496685 and Xla.L GeneID: 108698315 (no inppl1b.S gene) | |||
=synteny patterns for INPPL1A/B in Vertebrates= | |||
Source: DAVID WEBB @REFSEQ NCBI | |||
INPPL1 (aka INPPL1A) | |||
HUMAN: ANAPC15< FOLR3> FOLR1> FOLR2> '''INPPL1'''> PHOX2A< CLPB< PDE2A< | |||
MonDom | |||
ANAPC15<folr3> folr1> folr2> '''INPPL1'''> PHOX2A< CLPB< LOC< | |||
echidna XP_038620978.1 | |||
LAMTOR1< ANAPC15< LOC< LOC> folr> '''INPPL1'''> PHOX2A< CLPB< LOC> | |||
Pheasant XP_031456985 | |||
LAMTOR1< LOC> ANAPC15< folr> '''INPPL1'''> PHOX2A< CLPB< | |||
GALLUS XM_040656636.1[PARTIAL], emu XP_025978297.1 | |||
//'''''inppl1'''''>// | |||
chelonia XP_037769744.1 | |||
ANAPC15<folr3> folr1> folr2> '''INPPL1'''> PHOX2A< CLPB< STARD10> | |||
podarcis XP_028581607.1 | |||
LAMTOR1< LOC> ANAPC15< folr> '''INPPL1'''> PHOX2A< CLPB< STARD10> | |||
Xtr XP_031753288.1 | |||
LAMTOR1< SFRPX> tomt< FOLR1> '''INPPL1'''> PHOX2A< CLPB< | |||
Rana XP_040189969.1 | |||
'''INPPL1'''> PHOX2A< CLPB< | |||
Microcacaelia XP_030055838.1 | |||
LAMTOR1< LOC> folr> '''INPPL1'''> PHOX2A< CLPB< STARD10> | |||
D. rerio NP_001034893.1 | |||
SIK3/SIDT2< '''INPPL1A'''> PHOX2A< CLPB< LOC< folr< ANAPC15> | |||
'''INPPL1B''' | |||
Human, koala | |||
PDZD11> RAB41< ARR3< '''P2RY4'''> AWAT1< DGAT2L6< IGBP1< | |||
platypus | |||
PDZD11> stard10-like< RAB41< ARR3< awat1< dgat2l6< IGBP1< | |||
Gallus XP_015133832.2 | |||
PDZD11> stard10-like< RAB41< ARR3< "'''INNPL1'''"> P2RY4> AWAT1/dgat2< IGBP1< | |||
Pheasant XP_031449847.1, emu XP_025951802.1 | |||
PDZD11> stard10-like< RAB41< ARR3< '''inppl1-like'''> P2RY4> dgat2< IGBP1< | |||
crocodile XP_019391783.1[misnamed INPPL1], chelonia XP_043377770.1 | |||
PDZD11> stard10-like< RAB41< ARR3< '''inppl1-like>''' P2RY4> dgat2< IGBP1< | |||
Xtrop XP_031746720.1 | |||
stard10-like< RAB41< ARR3< '''inppl1-like'''> P2RY4> DGAT2L6< IGBP1< | |||
Rana XP_040190387.1 | |||
ARR3< '''innpl1-like>''' p2ry4> loc< PDZD11< | |||
Microcacaelia XP_030065653.1 | |||
RAB41< '''inppl1-like>''' IGBP1< | |||
Protoperus XP_043913229.1 | |||
PDZD11> stard10-like< rab41< ARR3< ''inppl1-like>'' p2ry4< p2ry4> | |||
D.rerio INPPL1B NP_001034224.2 | |||
ARR3B< '''INPPL1B >''' P2RY4> SOX3> | |||
Latest revision as of 09:48, 15 June 2023
inppl1b
This is the community wiki page for the gene inppl1b please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase.
nomenclature changes
Vertebrates have two INPPL1 genes, but mammals have lost one of them (INPPL1B). ZFIN correctly recognizes INPPL1A and INNPL1B in Zebrafish. The orthologous gene names and symbols in Xenopus and chicken were updated accordingly.
XB-GENEPAGE-1013836 (GeneIDs:100485745, 108708768, no inppl1a.S) changed from inppl1, to inppl1a/ ’inositol polyphosphate phosphatase-like 1a’
Created this XB-GENEPAGE for inppl1b, inositol polyphosphate phosphatase-like 1B that includes Xtr GeneID: 100496685 and Xla.L GeneID: 108698315 (no inppl1b.S gene)
synteny patterns for INPPL1A/B in Vertebrates
Source: DAVID WEBB @REFSEQ NCBI
INPPL1 (aka INPPL1A)
HUMAN: ANAPC15< FOLR3> FOLR1> FOLR2> INPPL1> PHOX2A< CLPB< PDE2A<
MonDom
ANAPC15<folr3> folr1> folr2> INPPL1> PHOX2A< CLPB< LOC<
echidna XP_038620978.1
LAMTOR1< ANAPC15< LOC< LOC> folr> INPPL1> PHOX2A< CLPB< LOC>
Pheasant XP_031456985
LAMTOR1< LOC> ANAPC15< folr> INPPL1> PHOX2A< CLPB<
GALLUS XM_040656636.1[PARTIAL], emu XP_025978297.1
//inppl1>//
chelonia XP_037769744.1
ANAPC15<folr3> folr1> folr2> INPPL1> PHOX2A< CLPB< STARD10>
podarcis XP_028581607.1
LAMTOR1< LOC> ANAPC15< folr> INPPL1> PHOX2A< CLPB< STARD10>
Xtr XP_031753288.1
LAMTOR1< SFRPX> tomt< FOLR1> INPPL1> PHOX2A< CLPB<
Rana XP_040189969.1
INPPL1> PHOX2A< CLPB<
Microcacaelia XP_030055838.1
LAMTOR1< LOC> folr> INPPL1> PHOX2A< CLPB< STARD10>
D. rerio NP_001034893.1
SIK3/SIDT2< INPPL1A> PHOX2A< CLPB< LOC< folr< ANAPC15>
INPPL1B
Human, koala
PDZD11> RAB41< ARR3< P2RY4> AWAT1< DGAT2L6< IGBP1<
platypus
PDZD11> stard10-like< RAB41< ARR3< awat1< dgat2l6< IGBP1<
Gallus XP_015133832.2
PDZD11> stard10-like< RAB41< ARR3< "INNPL1"> P2RY4> AWAT1/dgat2< IGBP1<
Pheasant XP_031449847.1, emu XP_025951802.1
PDZD11> stard10-like< RAB41< ARR3< inppl1-like> P2RY4> dgat2< IGBP1<
crocodile XP_019391783.1[misnamed INPPL1], chelonia XP_043377770.1
PDZD11> stard10-like< RAB41< ARR3< inppl1-like> P2RY4> dgat2< IGBP1<
Xtrop XP_031746720.1
stard10-like< RAB41< ARR3< inppl1-like> P2RY4> DGAT2L6< IGBP1<
Rana XP_040190387.1
ARR3< innpl1-like> p2ry4> loc< PDZD11<
Microcacaelia XP_030065653.1
RAB41< inppl1-like> IGBP1<
Protoperus XP_043913229.1
PDZD11> stard10-like< rab41< ARR3< inppl1-like> p2ry4< p2ry4>
D.rerio INPPL1B NP_001034224.2
ARR3B< INPPL1B > P2RY4> SOX3>