XB-FEAT-992706: Difference between revisions
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22 June 2023 | 22 June 2023 | ||
''Xenopus gene name changed from carbonic anhydrase XIII'' to ''carbonic anhydrase 13 gene 1'' | ''Xenopus'' gene name changed from ''carbonic anhydrase XIII'' to ''carbonic anhydrase 13 gene 1'' | ||
This name update is because a) the human name has changed from using roman numerals to arabic numerals, and b) a duplicated ''ca13'' genes was identified in ''X. tropicalis'' and ''X.laevis'' on chromosomes 6/6L/6S. | This name update is because a) the human name has changed from using roman numerals to arabic numerals, and b) a duplicated ''ca13'' genes was identified in ''X. tropicalis'' and ''X.laevis'' on chromosomes 6/6L/6S. This was supported by synteny, protein alignment and phlogenetic trees of all of the 'ca' genes in this arm of Chr6/6L/6S | ||
Subsequently ''ca13.1'' is added as as synonym. | Subsequently ''ca13.1'' is added as as synonym. | ||
A new gene page is being created fro these ''ca13.2'' genes | A new gene page is being created fro these ''ca13.2'' genes | ||
=synteny= | |||
Xtr chr6: e2f5> rbis< '''car1_p(ca13.2)> ca13> ca1< ca3> ca2>''' ... pskh2< | |||
Xla.Chr6L: e2f5.L> rbis.L< '''LOC108719319(ca13.2.L)> ca13.L> ca1.L< ca3.L> ca2.L>''' ... LOC108719321(pskh2.L)< | |||
Xla.Chr6S: e2f5.S> rbis.S< '''LOC496283(ca13.2.S)> LOC108719741(ca13.S)> ca2.S>''' pskh2.S> | |||
Human: E2F5> RBIS< '''CA13> CA1< CA3< CA2>''' PSKH2> | |||
The following proteins accessions for the ''X. tropicalis'' and 'X. laevis'' ''ca'' gens were used to determine the relationship between genes/species and that the 'new' gene was a duplicate of ''ca13'', as opposed to a novel 'ca' gene' or a duplicate of one of the othehr 'ca' genes in this cluster. | |||
ref|NP_001072785.1| | |||
ref|NP_001072448.1| | |||
ref|XP_002939197.2| | |||
ref|XP_012820094.1| | |||
ref|XP_002939198.1| | |||
ref|XP_017950194.1| | |||
ref|XP_041422471.1| | |||
ref|NP_001088912.1| | |||
ref|XP_018124394.1| | |||
ref|NP_001079371.1| | |||
ref|NP_001086981.1| | |||
ref|XP_018122409.1| | |||
ref|XP_018123594.1| | |||
ref|NP_001080080.1| | |||
Latest revision as of 11:17, 22 June 2023
ca13
This is the community wiki page for the gene ca13 please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase.
nomenclature changes
22 June 2023
Xenopus gene name changed from carbonic anhydrase XIII to carbonic anhydrase 13 gene 1
This name update is because a) the human name has changed from using roman numerals to arabic numerals, and b) a duplicated ca13 genes was identified in X. tropicalis and X.laevis on chromosomes 6/6L/6S. This was supported by synteny, protein alignment and phlogenetic trees of all of the 'ca' genes in this arm of Chr6/6L/6S
Subsequently ca13.1 is added as as synonym.
A new gene page is being created fro these ca13.2 genes
synteny
Xtr chr6: e2f5> rbis< car1_p(ca13.2)> ca13> ca1< ca3> ca2> ... pskh2<
Xla.Chr6L: e2f5.L> rbis.L< LOC108719319(ca13.2.L)> ca13.L> ca1.L< ca3.L> ca2.L> ... LOC108719321(pskh2.L)<
Xla.Chr6S: e2f5.S> rbis.S< LOC496283(ca13.2.S)> LOC108719741(ca13.S)> ca2.S> pskh2.S>
Human: E2F5> RBIS< CA13> CA1< CA3< CA2> PSKH2>
The following proteins accessions for the X. tropicalis and 'X. laevis ca gens were used to determine the relationship between genes/species and that the 'new' gene was a duplicate of ca13, as opposed to a novel 'ca' gene' or a duplicate of one of the othehr 'ca' genes in this cluster.
ref|NP_001072785.1| ref|NP_001072448.1| ref|XP_002939197.2| ref|XP_012820094.1| ref|XP_002939198.1| ref|XP_017950194.1| ref|XP_041422471.1| ref|NP_001088912.1| ref|XP_018124394.1| ref|NP_001079371.1| ref|NP_001086981.1| ref|XP_018122409.1| ref|XP_018123594.1| ref|NP_001080080.1|