XB-FEAT-22065609: Difference between revisions
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= '' | = ''sprtnl2'' = | ||
This is the community wiki page for '' | This is the community wiki page for ''sprtnl2'' - please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase. | ||
=nomenclature changes= | =nomenclature changes= | ||
05JAN2023 | 05JAN2023 | ||
gene symbol changed from ''XB22065609 [provisional:sprtn]'' to ''sprtnl2''. | ''Xenopus'' gene name changed from ''provisional ortholog of SprT-like N-terminal domain'' to ''SprT-like N-terminal domain like gene 2 (provisional)'' | ||
''Xenopus'' gene symbol changed from ''XB22065609 [provisional:sprtn]'' to ''sprtnl2''. | |||
both gene name and symbol are (provisional) awaiting HGNC/NCBI Ref Seq approval. | both gene name and symbol are (provisional) awaiting HGNC/NCBI Ref Seq approval. | ||
25April2023 | |||
''Xenopus'' gene symbol changed from ''sprtnl2'' to ''sprtnl.2'' as RefSeq suggested, not giving this gene a ''Xenopus'' only numerical suffix, as it would never propogate through to other species, so we applied ''Xenopus'' nomenclature and the 'gene 2'suffix. | |||
14JULY2023 | |||
Gene symbol changed from ''sprtnl.2'' to ''sprtnl2'' in accordance with Xenbase nomenclature guidelines. | |||
=synteny= | =synteny= | ||
X. laevis sprtn.S on Chromosome 5.S seems to be the true orthology of human SPRTN, with both being flanked by eglin1 and exoc8. | ''X. laevis sprtn.S'' on Chromosome 5.S seems to be the true orthology of human SPRTN, with both being flanked by ''eglin1'' and ''exoc8''. | ||
Human chr 1: RNA5SP80< ... EXOC8< ... '''SPRTN'''> ...LOC107985360> ... EGLN1< ...LOC122152336> | Human chr 1: RNA5SP80< ... EXOC8< ... '''SPRTN'''> ...LOC107985360> ... EGLN1< ...LOC122152336> | ||
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the 2 other ''X. tropicalis'' genes have been given provisional names ''sprtn2''[geneID: 105945677) and ''sprtn3'' [geneID: 105948375] | the 2 other ''X. tropicalis'' genes have been given provisional names ''sprtn2'' [geneID: 105945677) and ''sprtn3'' [geneID: 105948375] | ||
X. trop chr1: jsprp1> ...amh< ...sf3a2< ... plekhj1> ... dot1l> ... '''''' | X. trop chr1: jsprp1> ...amh< ...sf3a2< ... plekhj1> ... dot1l> ... ''''''sprtnl2''''''> ... ap3d1> ... mob3a> ... mknk2> ... btbd2> ... csnk1g2< ... | ||
X. trop chr9: gng13> ... chtf18< ... rpusd1> ... msin< ... '''''' | X. trop chr9: gng13> ... chtf18< ... rpusd1> ... msin< ... ''''''sprtnl3''''''< ... LOC#3326> ... LOC#3470 ... | ||
Latest revision as of 10:24, 14 July 2023
sprtnl2
This is the community wiki page for sprtnl2 - please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase.
nomenclature changes
05JAN2023
Xenopus gene name changed from provisional ortholog of SprT-like N-terminal domain to SprT-like N-terminal domain like gene 2 (provisional)
Xenopus gene symbol changed from XB22065609 [provisional:sprtn] to sprtnl2.
both gene name and symbol are (provisional) awaiting HGNC/NCBI Ref Seq approval.
25April2023
Xenopus gene symbol changed from sprtnl2 to sprtnl.2 as RefSeq suggested, not giving this gene a Xenopus only numerical suffix, as it would never propogate through to other species, so we applied Xenopus nomenclature and the 'gene 2'suffix.
14JULY2023
Gene symbol changed from sprtnl.2 to sprtnl2 in accordance with Xenbase nomenclature guidelines.
synteny
X. laevis sprtn.S on Chromosome 5.S seems to be the true orthology of human SPRTN, with both being flanked by eglin1 and exoc8.
Human chr 1: RNA5SP80< ... EXOC8< ... SPRTN> ...LOC107985360> ... EGLN1< ...LOC122152336>
X. laevis chr5.S: sf3b5.S< ... exoc8.S< ...tsnax.S< ... egln1.S< .. sprtn.S> ... acta1.S< ... LOC108717893< ...
the 2 other X. tropicalis genes have been given provisional names sprtn2 [geneID: 105945677) and sprtn3 [geneID: 105948375]
X. trop chr1: jsprp1> ...amh< ...sf3a2< ... plekhj1> ... dot1l> ... 'sprtnl2'> ... ap3d1> ... mob3a> ... mknk2> ... btbd2> ... csnk1g2< ...
X. trop chr9: gng13> ... chtf18< ... rpusd1> ... msin< ... 'sprtnl3'< ... LOC#3326> ... LOC#3470 ...