XB-FEAT-5732027: Difference between revisions
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=ctu2= | =''ctu2''= | ||
This is the community wiki page for the gene ''ctu2'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase | This is the community wiki page for the gene ''ctu2'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase | ||
=nomenclature changes= | |||
04/22/ 2016 | |||
Human name has changed for Entrez Gene: 348180. From cytosolic thiouridylase subunit 2 homolog (S. pombe) to cytosolic thiouridylase subunit 2 | |||
=annotation notes= | |||
20SEPT2023 | |||
there does not appear to be a ctu2.S gene model in the v10 X. laevis genome annotation. | |||
LOC108714968 is not the ctu2.S despite being in the 'correct' syntenic position- being flanked by ''rnf166.S'' and ''piezo1.S'' . | |||
The refseq protein accessions are very different. | |||
Xla.ctu2.L | |||
>lcl|Query_10001 NP_001034829.1 cytoplasmic tRNA 2-thiolation protein 2 [Xenopus tropicalis] | |||
MCEEEEVYCPELQDTTQGKSLGKTCMKCKESSAVLLIRAGDAFCKSCFKEYFVHKFRATLGKNRVIYPGEKVLLAFSGGPSSSAMVQQVQEGMSRDAPKKLRFVPGILFIDEGTTCGMSHEERQQNMSEVQNVLQQTGFPFYIVSLEQVFSLPGSILQRGVPEQRANYKQEVDRFMVQQQAQGETGCSDILENLAKLGVNVSESSRESDKMFQSTCRHPPDTHTQKLIQLFASAKTLTAKHQLLHTLRSHLILHIARTCGYSKVMSGESCTRLSVSLLSNISLGRGAFLPLDTGFCDSRYGDVDIIRPMREYSLKEIAFYNRLFHVSSVFIPALNTKVLENSSIQQLSEVFINRLQADFPSTVSTVYRTSEKLNVSKIDANQGTCAKERCLLCLSPLDTQVGEASAFHATQISHYISQKILMKFNDPANSSGKSCCQEGKCCKGPGYGDFCQPRALQAPSFVDMLCYGCRLTVKDLQSLDALPQYVLHEAEHRSRRIEMRKEIEEFLLDKDEENLH | |||
LOC108714968 | |||
>lcl|Query_10002 XP_041417076.1 cyclin-O protein B [Xenopus laevis] | |||
METFIKKRKRLAIPESQEGSHYDCRCYKITKYESNRQGTCSSAVVLDPWSTFGNLMPDTLQNFMDYGETCYMFNKSLEEDFAPNNFLGKHSDIDETSWREVITTMIAAHRAFRLDFETLCLAVNYLERFLACTPLKAASLKVIGATCLYLACKVMEKSLPKIDMFLLLFCEDGFTAPLMYYLEKLVLRRLCFRLRAPTIEYFLEHFSLRRVSYKECPAAKINRAANAFTAARGIAALSMTRYGFHSYPPSLLAQCCLRVADQILQYDTWNRAHPRDCSGPLWRECMGKITHLVSSNKILLCKFMPGVFPETFPDLVSPPTKSGSKANI | |||
[CJZ] | |||
Latest revision as of 12:27, 20 September 2023
ctu2
This is the community wiki page for the gene ctu2 please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase
nomenclature changes
04/22/ 2016
Human name has changed for Entrez Gene: 348180. From cytosolic thiouridylase subunit 2 homolog (S. pombe) to cytosolic thiouridylase subunit 2
annotation notes
20SEPT2023
there does not appear to be a ctu2.S gene model in the v10 X. laevis genome annotation.
LOC108714968 is not the ctu2.S despite being in the 'correct' syntenic position- being flanked by rnf166.S and piezo1.S .
The refseq protein accessions are very different.
Xla.ctu2.L >lcl|Query_10001 NP_001034829.1 cytoplasmic tRNA 2-thiolation protein 2 [Xenopus tropicalis] MCEEEEVYCPELQDTTQGKSLGKTCMKCKESSAVLLIRAGDAFCKSCFKEYFVHKFRATLGKNRVIYPGEKVLLAFSGGPSSSAMVQQVQEGMSRDAPKKLRFVPGILFIDEGTTCGMSHEERQQNMSEVQNVLQQTGFPFYIVSLEQVFSLPGSILQRGVPEQRANYKQEVDRFMVQQQAQGETGCSDILENLAKLGVNVSESSRESDKMFQSTCRHPPDTHTQKLIQLFASAKTLTAKHQLLHTLRSHLILHIARTCGYSKVMSGESCTRLSVSLLSNISLGRGAFLPLDTGFCDSRYGDVDIIRPMREYSLKEIAFYNRLFHVSSVFIPALNTKVLENSSIQQLSEVFINRLQADFPSTVSTVYRTSEKLNVSKIDANQGTCAKERCLLCLSPLDTQVGEASAFHATQISHYISQKILMKFNDPANSSGKSCCQEGKCCKGPGYGDFCQPRALQAPSFVDMLCYGCRLTVKDLQSLDALPQYVLHEAEHRSRRIEMRKEIEEFLLDKDEENLH
LOC108714968
>lcl|Query_10002 XP_041417076.1 cyclin-O protein B [Xenopus laevis] METFIKKRKRLAIPESQEGSHYDCRCYKITKYESNRQGTCSSAVVLDPWSTFGNLMPDTLQNFMDYGETCYMFNKSLEEDFAPNNFLGKHSDIDETSWREVITTMIAAHRAFRLDFETLCLAVNYLERFLACTPLKAASLKVIGATCLYLACKVMEKSLPKIDMFLLLFCEDGFTAPLMYYLEKLVLRRLCFRLRAPTIEYFLEHFSLRRVSYKECPAAKINRAANAFTAARGIAALSMTRYGFHSYPPSLLAQCCLRVADQILQYDTWNRAHPRDCSGPLWRECMGKITHLVSSNKILLCKFMPGVFPETFPDLVSPPTKSGSKANI
[CJZ]