XB-FEAT-956773: Difference between revisions
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= | =''cyp2a6.13''= | ||
This is the community wiki page for the gene '' | This is the community wiki page for the gene ''cyp2a6.13'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase. | ||
=synteny and annotation notes= | |||
31JAN2023 | |||
The ''cyp2a6'' genes in ''Xenopus'' have undergone a series of tandem duplication events, resulting in at least 15 duplicated genes. | |||
All genes in the ''cyp2a6'' gene family are found on Chr8/8L/8S in ''Xenopus'', and are flanked by ''rab4b'' and ''egin2'' nominally upstream, and ''axl'' and ''olfm4'' downstream. | |||
Based on synteny, protein alignmnet and phlogenetic analyses (COBALT run RID XJNBG46W212 (36 seqs)) of the protein coding sequences for all the v10 gene models annotations, | |||
several new models have been added to the ''cyp2a6'' Xenbase gene pages, and 2 more duplications have been identified between ''cyp2a6.1'' and ''axl'' in ''X. tropicalis''. To preserve the currenting naming scheme, and to avoid confusion, these newly annoatated gene models will be called ''cyp2a6.14'' and ''cyp2a6.15''. A 3rd newly annotated allele in Xtrop (MGC69353) and Xlaevis.L (LOC108698627) is a cytochrome p450-related or cytochrome p450-like protein, according to DIOPT/EggNog homology grouping, but doesn't appear to be a ''cyp2a6'' family member. | |||
These are the 36 protein accession used in this COBALT run: RID XJNBG46W212 | |||
Xtropicalis proteins/genes | |||
XP_031746917.1, XP_031746918.1 LOC116406634 | |||
XP_031746921.1 LOC116406636 | |||
XP_031746919.1 LOC116406635 | |||
XP_002939423.2 cyp2a6.10 | |||
NP_001010998.1 cyp2a6.9 | |||
NP_001010999.1 cyp2a6.8 | |||
XP_002939424.3 cyp2a6.7 | |||
NP_001123668.1 cyp2a6.6 | |||
XP_004917147.1 cyp2a6.5 | |||
XP_004917148.2 cyp2a6.4 | |||
XP_002939425.2 cyp2a6.3 | |||
NP_001106451.1 cyp2a6.2 | |||
NP_001120541.1 cyp2a6.1 | |||
XP_002939427.3 LOC100497503 | |||
XP_031746920.1 LOC100497808 | |||
NP_001001212.1 MGC69353 | |||
XP_002939428.1 cyp2g1p | |||
XP_004917150.2 LOC101730692 | |||
Xlaevis.L proetins/genes | |||
XP_018085736.1 cyp2a6.13 | |||
NP_001085245.1 cyp2a6.12 | |||
NP_001087448.1 cyp2a6.10 | |||
NP_001090537.1 cyp2a6.9 | |||
XP_041429857.1 LOC108698953 | |||
NP_001085249.1 cyp2a6.8 | |||
XP_018085733.1 cyp2a6.7 | |||
XP_018085731.1 cyp2a6.5 | |||
NP_001088532.1 cyp2a6.4 | |||
NP_001087938.1 cyp2a6.3 | |||
XP_018085730.1 cyp2a6.2 | |||
NP_001083310.1 MGC68450 | |||
XP_018085735.1 cyp2a6.1 | |||
XP_018085737.2 LOC108698627 | |||
Xlaevis.S proteins/genes | |||
XP_018088813.1 cyp2a6.11.S | |||
XP_041431246.1 cyp2a6.2.S | |||
XP_041430005.1 cyp2a6.1.S | |||
Latest revision as of 12:10, 31 January 2023
cyp2a6.13
This is the community wiki page for the gene cyp2a6.13 please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase.
synteny and annotation notes
31JAN2023 The cyp2a6 genes in Xenopus have undergone a series of tandem duplication events, resulting in at least 15 duplicated genes.
All genes in the cyp2a6 gene family are found on Chr8/8L/8S in Xenopus, and are flanked by rab4b and egin2 nominally upstream, and axl and olfm4 downstream.
Based on synteny, protein alignmnet and phlogenetic analyses (COBALT run RID XJNBG46W212 (36 seqs)) of the protein coding sequences for all the v10 gene models annotations, several new models have been added to the cyp2a6 Xenbase gene pages, and 2 more duplications have been identified between cyp2a6.1 and axl in X. tropicalis. To preserve the currenting naming scheme, and to avoid confusion, these newly annoatated gene models will be called cyp2a6.14 and cyp2a6.15. A 3rd newly annotated allele in Xtrop (MGC69353) and Xlaevis.L (LOC108698627) is a cytochrome p450-related or cytochrome p450-like protein, according to DIOPT/EggNog homology grouping, but doesn't appear to be a cyp2a6 family member.
These are the 36 protein accession used in this COBALT run: RID XJNBG46W212
Xtropicalis proteins/genes
XP_031746917.1, XP_031746918.1 LOC116406634 XP_031746921.1 LOC116406636 XP_031746919.1 LOC116406635 XP_002939423.2 cyp2a6.10 NP_001010998.1 cyp2a6.9 NP_001010999.1 cyp2a6.8 XP_002939424.3 cyp2a6.7 NP_001123668.1 cyp2a6.6 XP_004917147.1 cyp2a6.5 XP_004917148.2 cyp2a6.4 XP_002939425.2 cyp2a6.3 NP_001106451.1 cyp2a6.2 NP_001120541.1 cyp2a6.1 XP_002939427.3 LOC100497503 XP_031746920.1 LOC100497808 NP_001001212.1 MGC69353 XP_002939428.1 cyp2g1p XP_004917150.2 LOC101730692
Xlaevis.L proetins/genes
XP_018085736.1 cyp2a6.13 NP_001085245.1 cyp2a6.12 NP_001087448.1 cyp2a6.10 NP_001090537.1 cyp2a6.9 XP_041429857.1 LOC108698953 NP_001085249.1 cyp2a6.8 XP_018085733.1 cyp2a6.7 XP_018085731.1 cyp2a6.5 NP_001088532.1 cyp2a6.4 NP_001087938.1 cyp2a6.3 XP_018085730.1 cyp2a6.2 NP_001083310.1 MGC68450 XP_018085735.1 cyp2a6.1 XP_018085737.2 LOC108698627
Xlaevis.S proteins/genes
XP_018088813.1 cyp2a6.11.S XP_041431246.1 cyp2a6.2.S XP_041430005.1 cyp2a6.1.S