XB-FEAT-950176: Difference between revisions
| (One intermediate revision by the same user not shown) | |||
| Line 2: | Line 2: | ||
This is the community wiki page for the gene ''atp2b4'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase. | This is the community wiki page for the gene ''atp2b4'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase. | ||
=gene annotation corrections= | ==gene annotation corrections= | ||
19APRIL2023 | 19APRIL2023 | ||
| Line 8: | Line 8: | ||
The gene names and designations for ''atp2b2'' and ''atp2b4'' have been reassessed. | The gene names and designations for ''atp2b2'' and ''atp2b4'' have been reassessed. | ||
Based on Synteny with human, it appears these genes in ''Xenopus'' had been mis-labelled, and corrected here. | Based on Synteny with human, it appears these genes in ''Xenopus'' had been mis-labelled, and are now corrected here. | ||
''Xenopus at2b2'' genes are on Chr4/4L4S, and do not share the same flanking genes | ''Xenopus at2b2'' genes are on Chr4/4L4S, and do not share the same flanking genes present in mammals. | ||
Human CHR3: GHRLOS> GHRL< SEC13< '''ATP2B2'''< SLC6A1> SLC6A11> HRH1> | |||
Xtrop Chr4: ''aspn> omd> ogn> nol8> iars1> '''atp2b2'''> fancd2>'' | |||
Xla | Xla chr4L: ''ogn.l> nol8.L> iars1.L> '''atp2b2.L>''' fancd2.L> fancd2os.L< fancd2os<'' | ||
Zfish | Zfish chr17: rpl29> iars1> '''atp2b2'''> slca11b> slc6a1b> atg7> | ||
''Xenopus'' ''atp2b4'' genes are on Chr2/2S ( not present on | ''Xenopus'' ''atp2b4'' genes are on Chr2/2S ( not present on ''X. laevis'' 2L) and share a conserved synteic gene patern with mammals, and lesser extent fish. These are the true orthologs of human ATP2B4. | ||
HUMAN CHR1: FMOD< PRELP> OPTC> '''ATP2B4'''> LAX1> ZC3H11A/ZBED6> SNRPE> | |||
Xtrop Chr2: ''srpk1< mapk14> zc3h11a< '''LOC100488346|atp2b4<''' optc< prelp< fmod>'' | |||
Xla | Xla chr2S: ''srpk1.S< mapk14.S> zc3h11a.S< '''LOC108709452|atp2b4<''' optc.S< prelp.S< fmod.S>'' | ||
Zfish | Zfish chr11: kiss1> csf1a< optc> '''atp2b4'''> mdm4> LOC< myog> ppfia4< | ||
=nomenclature changes= | =nomenclature changes= | ||
19APRIL2023 | 19APRIL2023 | ||
X. tropicalis Gene ID 100488346 [XB-GENE-950177] | X. tropicalis Gene ID 100488346 [XB-GENE-950177] changed from atp2b2, ATPase, Ca++ transporting, plasma membrane 2 to atp2b4, ATPase plasma membrane Ca2+ transporting 4 | ||
X. laevis Gene ID 108709452 [XELAEV_18014870mg] | X. laevis Gene ID 108709452 [XELAEV_18014870mg] changed from LOC108709452, plasma membrane calcium-transporting ATPase 4 to atp2b4.S, ATPase plasma membrane Ca2+ transporting 4 S homeolog | ||
X. tropicalis Gene ID: 100487776 [XB-GENE-960658] | X. tropicalis Gene ID: 100487776 [XB-GENE-960658] changed from atp2b4, ATPase, Ca++ transporting, plasma membrane 4 to atp2b2, ATPase plasma membrane Ca2+ transporting 2 | ||
X. laevis Gene ID: 446855 [XELAEV_18023767mg] | X. laevis Gene ID: 446855 [XELAEV_18023767mg] changed from atp2b4.L, ATPase, Ca++ transporting, plasma membrane 4 L homeolog to atp2b2.L, ATPase plasma membrane Ca2+ transporting 2 L homeolog | ||
X. laevis Gene ID: 108715812 [XELAEV_18025751mg] | X. laevis Gene ID: 108715812 [XELAEV_18025751mg] changed from atp2b4.S, ATPase, Ca++ transporting, plasma membrane 4 S homeolog to atp2b2.S, ATPase plasma membrane Ca2+ transporting 2 S homeolog | ||
Latest revision as of 10:39, 15 June 2023
atp2b4
This is the community wiki page for the gene atp2b4 please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase.
=gene annotation corrections
19APRIL2023
The gene names and designations for atp2b2 and atp2b4 have been reassessed.
Based on Synteny with human, it appears these genes in Xenopus had been mis-labelled, and are now corrected here.
Xenopus at2b2 genes are on Chr4/4L4S, and do not share the same flanking genes present in mammals.
Human CHR3: GHRLOS> GHRL< SEC13< ATP2B2< SLC6A1> SLC6A11> HRH1>
Xtrop Chr4: aspn> omd> ogn> nol8> iars1> atp2b2> fancd2>
Xla chr4L: ogn.l> nol8.L> iars1.L> atp2b2.L> fancd2.L> fancd2os.L< fancd2os<
Zfish chr17: rpl29> iars1> atp2b2> slca11b> slc6a1b> atg7>
Xenopus atp2b4 genes are on Chr2/2S ( not present on X. laevis 2L) and share a conserved synteic gene patern with mammals, and lesser extent fish. These are the true orthologs of human ATP2B4.
HUMAN CHR1: FMOD< PRELP> OPTC> ATP2B4> LAX1> ZC3H11A/ZBED6> SNRPE>
Xtrop Chr2: srpk1< mapk14> zc3h11a< LOC100488346|atp2b4< optc< prelp< fmod>
Xla chr2S: srpk1.S< mapk14.S> zc3h11a.S< LOC108709452|atp2b4< optc.S< prelp.S< fmod.S>
Zfish chr11: kiss1> csf1a< optc> atp2b4> mdm4> LOC< myog> ppfia4<
nomenclature changes
19APRIL2023
X. tropicalis Gene ID 100488346 [XB-GENE-950177] changed from atp2b2, ATPase, Ca++ transporting, plasma membrane 2 to atp2b4, ATPase plasma membrane Ca2+ transporting 4
X. laevis Gene ID 108709452 [XELAEV_18014870mg] changed from LOC108709452, plasma membrane calcium-transporting ATPase 4 to atp2b4.S, ATPase plasma membrane Ca2+ transporting 4 S homeolog
X. tropicalis Gene ID: 100487776 [XB-GENE-960658] changed from atp2b4, ATPase, Ca++ transporting, plasma membrane 4 to atp2b2, ATPase plasma membrane Ca2+ transporting 2
X. laevis Gene ID: 446855 [XELAEV_18023767mg] changed from atp2b4.L, ATPase, Ca++ transporting, plasma membrane 4 L homeolog to atp2b2.L, ATPase plasma membrane Ca2+ transporting 2 L homeolog
X. laevis Gene ID: 108715812 [XELAEV_18025751mg] changed from atp2b4.S, ATPase, Ca++ transporting, plasma membrane 4 S homeolog to atp2b2.S, ATPase plasma membrane Ca2+ transporting 2 S homeolog