XB-FEAT-6462861: Difference between revisions
Created page with "=''il17rel''= thsi is the community wiki page for the ''Xenopus'' ''il17rel'' genes. Please post here any relevant information about these genes that is not found elsewhere o..." |
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08MAY2023 | 08MAY2023 | ||
''Xenopus'' gene name was suffixed with 'gene 1' as there are 2 ''il17rel'' genes on the ''X. laevis'' L sub- | ''Xenopus'' gene name was suffixed with 'gene 1' as there are 2 ''il17rel'' genes on the ''X. laevis'' L sub-genome LOC108711163 and LOC121401505. | ||
A new gene page for the 2nd ''X. laevis il17rel.2'' gene has been made: XB-GENEPAGE-29208227 | |||
28JULY2023 | |||
Human name has changed for Entrez Gene: 400935. From interleukin 17 receptor E-like gene 2 to interleukin 17 receptor E like | |||
=synteny= | =synteny= | ||
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Xla.chr3S(rv): ''qrich1l.>S '''LOC121402185(il17rel)>''' [2x ncRNAs] pim3.S> creid2.S< zbed4<.S brd1.S>'' | Xla.chr3S(rv): ''qrich1l.>S '''LOC121402185(il17rel)>''' [2x ncRNAs] pim3.S> creid2.S< zbed4<.S brd1.S>'' | ||
=protein alignment= | |||
08May2023 | |||
Protein alignment for ''Xenopus trop il17rel'' and the 3x ''X. laevis il17rel'' genes with orthologs in human, chick and fish confirms orthology and that the 2 X. laevis genes are each others closest pair. | |||
ref|XP_041444452.1| | |||
ref|XP_018108100.2| | |||
ref|XP_041442366.1| | |||
ref|XP_012815430.1| | |||
ref|NP_001001694.2| | |||
ref|XP_002666936.2| | |||
ref|XP_015129182.2| | |||
Latest revision as of 11:53, 28 July 2023
il17rel
thsi is the community wiki page for the Xenopus il17rel genes. Please post here any relevant information about these genes that is not found elsewhere on Xenbase.
nomenclature changes
08MAY2023
Xenopus gene name was suffixed with 'gene 1' as there are 2 il17rel genes on the X. laevis L sub-genome LOC108711163 and LOC121401505.
A new gene page for the 2nd X. laevis il17rel.2 gene has been made: XB-GENEPAGE-29208227
28JULY2023
Human name has changed for Entrez Gene: 400935. From interleukin 17 receptor E-like gene 2 to interleukin 17 receptor E like
synteny
Xtr.Chr3: qrich1l> mov10l1< mlc1> il17rel> pim3> alg12> creid2< zbed4< brd1>
Xla.chr3L: qrich1.L> mov10l1.L< LOC#1162(mlc1)> LOC108711163(il17rel gene1)> LOC121401505(il17rel gene 2) pim3.L> alg12.L> creid2.L< zbed4.l<
Xla.chr3S(rv): qrich1l.>S LOC121402185(il17rel)> [2x ncRNAs] pim3.S> creid2.S< zbed4<.S brd1.S>
protein alignment
08May2023
Protein alignment for Xenopus trop il17rel and the 3x X. laevis il17rel genes with orthologs in human, chick and fish confirms orthology and that the 2 X. laevis genes are each others closest pair.
ref|XP_041444452.1| ref|XP_018108100.2| ref|XP_041442366.1| ref|XP_012815430.1| ref|NP_001001694.2| ref|XP_002666936.2| ref|XP_015129182.2|