XB-FEAT-6538722: Difference between revisions
| (4 intermediate revisions by the same user not shown) | |||
| Line 4: | Line 4: | ||
=annotation notes= | =annotation notes= | ||
04.04.2024 | 04.04.2024 | ||
The orthology of these ''Xenopus'' ''esr-5'' genes is unassigned as of 4.4.24, yet a quick assessment of the protein sequence in EggNog6.0, it matches the Hes7 orthology group (in ~8k proteins and 1165 species). | |||
InterPro domain assessment shows the protein contains a '''bHLH-O_HES7''' and '''orange_5''' domains , which also support idea that these are Hes7 proteins and need renaming. | |||
=InterPro GO terms= | |||
'''Biological Process''' | |||
regulation of DNA-templated transcription (GO:0006355) | |||
'''Molecular Function''' | |||
DNA binding (GO:0003677) | |||
protein dimerization activity (GO:0046983) | |||
'''Cellular Component''' | |||
None | |||
=protein | =protein sequences= | ||
the Xtrop and Xlaevis protein sequences are almost identical | NB: the Xtrop and Xlaevis protein sequences are almost identical | ||
>uncharacterized protein LOC100135364 [Xenopus tropicalis] | >uncharacterized protein LOC100135364 [Xenopus tropicalis] | ||
| Line 18: | Line 32: | ||
>>XP_018109262.1 PREDICTED: transcription factor HES-7 [Xenopus laevis] | >>XP_018109262.1 PREDICTED: transcription factor HES-7 [Xenopus laevis] | ||
MPDMEYSDTFPSRKILKPVVEKQRRDRINRSLGEMRILLFQLTGNQKLQNPKMEKAEILELAVIYIRNVTRMKTHDPNKWASPAEKMYVSGFRECLDRTEDFISEISPKARAVFLDNLQTHLQQRLLLPQQVGGPGGDHEEDLMSNGSELSPIMDYSISRDELSLCTPSSSLGSESGSPPAWLPSSPPNPHEQPPLYIWRPWP | MPDMEYSDTFPSRKILKPVVEKQRRDRINRSLGEMRILLFQLTGNQKLQNPKMEKAEILELAVIYIRNVTRMKTHDPNKWASPAEKMYVSGFRECLDRTEDFISEISPKARAVFLDNLQTHLQQRLLLPQQVGGPGGDHEEDLMSNGSELSPIMDYSISRDELSLCTPSSSLGSESGSPPAWLPSSPPNPHEQPPLYIWRPWP | ||
Latest revision as of 09:27, 4 April 2024
esr-5
This is the community wiki page for the gene esr-5 please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase.
annotation notes
04.04.2024 The orthology of these Xenopus esr-5 genes is unassigned as of 4.4.24, yet a quick assessment of the protein sequence in EggNog6.0, it matches the Hes7 orthology group (in ~8k proteins and 1165 species).
InterPro domain assessment shows the protein contains a bHLH-O_HES7 and orange_5 domains , which also support idea that these are Hes7 proteins and need renaming.
InterPro GO terms
Biological Process
regulation of DNA-templated transcription (GO:0006355)
Molecular Function
DNA binding (GO:0003677)
protein dimerization activity (GO:0046983)
Cellular Component
None
protein sequences
NB: the Xtrop and Xlaevis protein sequences are almost identical
>uncharacterized protein LOC100135364 [Xenopus tropicalis] mpdmeysdtfpsrkilkpvvekqrrdrinrsleemrvlllkltgnqklqnpkmekaeilelaviyirnvthmkthdasqwvspaeklylsgfrecldrtedfiseispkaravfldnlqthlqqrlhfptqvglggpgrdheedlmssgnglspimdysisrddlslctppsslssesgspqqwlpasppnqheqapfyiwrpwp
>>XP_018109262.1 PREDICTED: transcription factor HES-7 [Xenopus laevis]
MPDMEYSDTFPSRKILKPVVEKQRRDRINRSLGEMRILLFQLTGNQKLQNPKMEKAEILELAVIYIRNVTRMKTHDPNKWASPAEKMYVSGFRECLDRTEDFISEISPKARAVFLDNLQTHLQQRLLLPQQVGGPGGDHEEDLMSNGSELSPIMDYSISRDELSLCTPSSSLGSESGSPPAWLPSSPPNPHEQPPLYIWRPWP