XB-FEAT-5872748: Difference between revisions
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XB-GENE-5872749) are paralogous genes on chromosome 1 and 4, respectively. | XB-GENE-5872749) are paralogous genes on chromosome 1 and 4, respectively. | ||
selenop encodes a selenoprotein with mutliple selenocysteine (Sec) residues | selenop encodes a selenoprotein with mutliple selenocysteine (Sec) residues (18), similar to SELENOP orthologs in mammals. | ||
(18), similar to SELENOP orthologs in mammals. | |||
'unnamed' has exon structure similar to selenop gene and encodes a protein with high sequence similarity to proteins referred to as selenoprotein Pb or selenoprotein Pb-like | 'unnamed' has exon structure similar to selenop gene and encodes a protein with high sequence similarity to proteins referred to as selenoprotein Pb or selenoprotein Pb-like | ||
(PMIDs:22479358, 11168591), but it is NOT a selenoprotein. | (PMIDs:22479358, 11168591), but it is '''NOT''' a selenoprotein. | ||
Some selenoproteinPb proteins contain a single Sec residue (e.g., zebrafish NP_840083.2 and chicken NP_001335698.1), but in frog, Sec is replaced by cysteine. For this reason, naming this locus is hard because it represents a cysteine-containing | |||
homolog of selenoprotein Pb protein family. | |||
To comply with Gladyshev et al.'s recommendation for naming paralogs (PMID:27645994, in table 3, SELENOP2 is recommended symbol for synonym SELPb), I would like to suggest the following nomenclature update for selenop and 'unnamed', but am open for the naming of the latter: | |||
recommendation for naming paralogs (PMID:27645994, in table 3, SELENOP2 is recommended symbol for synonym SELPb), I would like to suggest the following nomenclature update for selenop and 'unnamed', but am open for the naming of the latter: | |||
current symbol name | current symbol name | ||
Revision as of 08:19, 31 August 2020
selenop2l
This is the community wiki page for the gene selenop2l please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase.
nomenclature changes
09/12/2017
named changed (XB-GENE-5872749) from selenoprotein P, plasma, 1 to selenoprotein P2-like
symbol changed (XB-GENE-5872749) from unnamed to selenop2l
correspondance from NIH
from Bhanu Rajput, Ph. D., Staff Scientist, Reference Sequence Project, NCBI/NLM/NIH
3. selenop (GeneID:100379942, XB-GENE-5866766) and 'unnamed' (GeneID:448755,
XB-GENE-5872749) are paralogous genes on chromosome 1 and 4, respectively.
selenop encodes a selenoprotein with mutliple selenocysteine (Sec) residues (18), similar to SELENOP orthologs in mammals.
'unnamed' has exon structure similar to selenop gene and encodes a protein with high sequence similarity to proteins referred to as selenoprotein Pb or selenoprotein Pb-like (PMIDs:22479358, 11168591), but it is NOT a selenoprotein.
Some selenoproteinPb proteins contain a single Sec residue (e.g., zebrafish NP_840083.2 and chicken NP_001335698.1), but in frog, Sec is replaced by cysteine. For this reason, naming this locus is hard because it represents a cysteine-containing homolog of selenoprotein Pb protein family.
To comply with Gladyshev et al.'s recommendation for naming paralogs (PMID:27645994, in table 3, SELENOP2 is recommended symbol for synonym SELPb), I would like to suggest the following nomenclature update for selenop and 'unnamed', but am open for the naming of the latter: current symbol name selenop (XB-GENE-5866766) > selenop1 selenoprotein P1
unnamed (XB-GENE-5872749) > selenop2l selenoprotein P2-like
ACTION BY XENBASE: 09/12/17
Changed; selenop (XB-GENE-5866766) > selenop1 selenoprotein P1 unnamed (XB-GENE-5872749) > selenop2l selenoprotein P2-like
as requested