XB-FEAT-6257460

trim26

This is the community wiki page for the gene trim26 please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase

nomenclature changes

06.30.2020

Human symbol has changed for genepage ID: 6257460 From trpm2l to trim26

Human symbol has changed for genepage ID: 6257460 From transient receptor potential cation channel, subfamily M, member 2 like to tripartite motif containing 26

1MAY2023

Synteny (below) does not support the orthology between Xenopus GeneID:100491139 and GeneID:108707608 and human trim26/TRIM26, and NCBI orthology analysis also does not identify Xtrop Gene ID:100491139 as an ortholog of TRIM26. Thus we conclude that these genes has been misannotated and incorrectly named trim26.

Q:IS THIS GENE THE ORTHOLOG OF TRPM2? A: No, Xtrop Gene ID: 100124999 is identified by NBCI as the true ortholog of TRPM2, although synteny is not conserved.

XB Actions:

1) removed the vertebrate orthologs for TRIM26 from this gene page XB-GENEPAGE-6257460.

2) renamed these genes trpm2l, transient receptor potential cation channel, subfamily M, member 2 like

Synteny as of April 29th, 2023

Human: TRIM 10 TRIM15 PAIP1P1 TRIM26 TRIM26BP HCG17

XTR.chr2: ilk tpp1 'trim26 [GeneID:100491139]' zscan2

Xla.chr2L: dynp1 rrp8.L mgc822989 tpp1 tif-if2 'trim26 [GeneID:108707608] ' zfp391

Human chr21: ICOSLG< DNMT3L AIRE PFKL> CFAP410. TRPM2 LRRC3 TSPEAR UGE2G2< SUMO3 PTTG1IP< ITGB2< SLX9>

Xtrop.Chr9: col5a2> col3a1<. gulp1< cfap410< trmp2>'Bold text' pth2r> pikfyve< c9h2orf80>