XB-FEAT-5871551: Difference between revisions
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=cyp27a1= | =''cyp27a1.5''= | ||
This is the community wiki page for the gene ''cyp27a1'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase | This is the community wiki page for the gene ''cyp27a1.5'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase | ||
This gene page, XB-GENEPAGE-5871551, also called cyp27a1, but has only v9 gene models, and the genes are not mapped to v10 models, and they seem to have unique Entrez ID. | This gene page, XB-GENEPAGE-5871551, also called cyp27a1, but has only v9 gene models, and the genes are not mapped to v10 models, and they seem to have unique Entrez ID. | ||
I have temporarily called this 'cyp27a1.5' ( just so that there are not 2 cyp27a1 gene pages) but these older gene models will be placed/archived on other XB pages ASAP and then this page will be deleted. Also need to request NCBI retire some gene IDS. | I have temporarily called this 'cyp27a1.5' ( just so that there are not 2 x cyp27a1 gene pages) but these older gene models will be placed/archived on other XB pages ASAP and then this page will be deleted. Also need to request NCBI retire some gene IDS. | ||
Which v10 models/Gene IDs do the v9 | Which v10 models/Gene IDs do the v9 gene models map to? | ||
v9.1 gene model for Xtrop (Gene I:D 100145773) and Gene ID: 594905 | v9.1 gene model for Xtrop (Gene I:D 100145773) and Gene ID: 594905 | ||
Latest revision as of 14:00, 17 May 2023
cyp27a1.5
This is the community wiki page for the gene cyp27a1.5 please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase
This gene page, XB-GENEPAGE-5871551, also called cyp27a1, but has only v9 gene models, and the genes are not mapped to v10 models, and they seem to have unique Entrez ID.
I have temporarily called this 'cyp27a1.5' ( just so that there are not 2 x cyp27a1 gene pages) but these older gene models will be placed/archived on other XB pages ASAP and then this page will be deleted. Also need to request NCBI retire some gene IDS.
Which v10 models/Gene IDs do the v9 gene models map to?
v9.1 gene model for Xtrop (Gene I:D 100145773) and Gene ID: 594905
Synteny: Xtr.chr09: znf142< bcs1l> cyp27a1< cyp27a1.3(LOC594905)< grsf1
v9.2 model for X.laevis.L Gene ID 733412
synteny: Xla.9_10L: XB984297.L [prov:cyp27a1]> loc100496109.L> grsf1.L> cyp27a1> bcs1l.L< cyp27a1.L Xelaev18044513m LOC108701304 [prov:bcs1l]< znf142.L> plcd4.L
Xla.9_10L: cyp27a1.L: gene48181 should map to cyp27a1.3.L XB-GENE-18386062
cyp27a1 (gene14122) should map to cyp27a1.2.L which is going on a new gene page (gp requested)