XB-FEAT-5995511: Difference between revisions
| Line 7: | Line 7: | ||
this gene was misidentified as ''scrt2'', AND IS RENAMED HERE AS SCRT1. | this gene was misidentified as ''scrt2'', AND IS RENAMED HERE AS SCRT1. | ||
Synteny supports the | Synteny supports the newly identified SCRT2 gene as the true ortholog of human SCRT2, and also the identity of ''Xenopus scrt1'' orthologs to human SCRT1: | ||
''Xenopus'' scrt1 genes are on Chr6/6S, flanked by dgat1 and fbxl6. | '''''Xenopus'' ''scrt1'' genes are on Chr6/6S, flanked by ''dgat1 and fbxl6''.''' | ||
Human chr8 [Gene ID]: 83482: DGAT1... '''SCRT1'''.... TME249.... FBXL6 | Human chr8 [Gene ID]: 83482: DGAT1... '''SCRT1'''.... TME249.... FBXL6 | ||
| Line 21: | Line 21: | ||
''Xenopus'' scrt2 is on chr10/9_10L/9_10S flanked by tcf15, srcn1 and slc52a3. | '''''Xenopus'' ''scrt2'' is on chr10/9_10L/9_10S flanked by ''tcf15, srcn1 and slc52a3''.''' | ||
XtrChr9 GeneID:116407977: tcf15 .. srxn1 ... '''LOC116407977(scratch family transcriptional repressor 2)''' ... | XtrChr9 GeneID:116407977: tcf15 .. srxn1 ... '''LOC116407977(scratch family transcriptional repressor 2)''' ... | ||
Revision as of 13:22, 5 June 2023
scrt1
This is the community wiki page for the gene scrt1 please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase.
nomenclature changes
27APRIL2023
this gene was misidentified as scrt2, AND IS RENAMED HERE AS SCRT1.
Synteny supports the newly identified SCRT2 gene as the true ortholog of human SCRT2, and also the identity of Xenopus scrt1 orthologs to human SCRT1:
Xenopus scrt1 genes are on Chr6/6S, flanked by dgat1 and fbxl6.
Human chr8 [Gene ID]: 83482: DGAT1... SCRT1.... TME249.... FBXL6
Xtrop chr6: [GeneID:100486069]: dgat1 ...LOC(tbc1d20) ... loc(cytb11b) ...scrt1 ... fbxl6 ... slc52a1
Xla.Chr6S: nuggc.S ... LOC(mfsd3)... slc39a4... LOC(cpsf1)... scrt1.S
Xla.L Chr6L: lacks these genes cpdf1.L< LOC#9501< nuggc.L> hgh1.L> mapk15.L
Xenopus scrt2 is on chr10/9_10L/9_10S flanked by tcf15, srcn1 and slc52a3.
XtrChr9 GeneID:116407977: tcf15 .. srxn1 ... LOC116407977(scratch family transcriptional repressor 2) ...
XlaChr9_10L:[rv] LOC108701995(riboflavin transporter 2) ...LOC108700962(scrt2.L) ... LOC108700963(srxn1.L)... tcf15.L ...
XlaChr9_10S Entrez Gene: 108695492: ... tcf15.S... srxn1.S... scrt2.S... slc52a3.S...
Human Chr20: ...TCF15...SRXN1... SCRT2... SLC52A3..
A new gene page for Xenopus 'scrt2' was built for LOC116407977, LOC108701995 and Gene ID: 108695492, scratch family transcriptional repressor 2: See XB-GENEPAGE-29072461.