XB-FEAT-995002: Difference between revisions
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X. laevis L homeolog v10 model was missing from the genepage. The pseudogene previously called LOC108718572 was confirmed to be the ortholog of taf4b in X. laevis L by synteny and sequence matching and added to the taf4b genepage, XB-GENEPAGE-995002. Genomic sequence was downloaded, exons as marked in NCBI Genbank by Gnomon were mapped to the genomic sequence, and isolated to identify a hypothetical CDS, which was then translated using EMBL EMBOSS Transeq into a hypothetical protein sequence. This was aligned to the X.tropicalis and X.laevis S genes (taf4b and taf4b.S) and confirmed to closely match. | X. laevis L homeolog v10 model was missing from the genepage. The pseudogene previously called LOC108718572 was confirmed to be the ortholog of taf4b in X. laevis L by synteny and sequence matching and added to the taf4b genepage, XB-GENEPAGE-995002. Genomic sequence was downloaded, exons as marked in NCBI Genbank by Gnomon were mapped to the genomic sequence, and isolated to identify a hypothetical CDS, which was then translated using EMBL EMBOSS Transeq into a hypothetical protein sequence. This was aligned to the X.tropicalis and X.laevis S genes (taf4b and taf4b.S) and confirmed to closely match. The X.laevis L homeolog was re-named to 'taf4bp.L' and 'TATA-box binding protein associated factor 4b pseudogene L homeolog' to reflect its status in v10 annotation as a pseudogene. | ||
Latest revision as of 10:33, 20 November 2023
taf4b
This is the community wiki page for the gene taf4b please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase
nomenclature changes
09/01/2016
Human name has changed for Entrez Gene: 6875. From TAF4b RNA polymerase II, TATA box binding protein (TBP)-associated factor, 105kDa to TATA-box binding protein associated factor 4b
11/20/2023
X. laevis L homeolog v10 model was missing from the genepage. The pseudogene previously called LOC108718572 was confirmed to be the ortholog of taf4b in X. laevis L by synteny and sequence matching and added to the taf4b genepage, XB-GENEPAGE-995002. Genomic sequence was downloaded, exons as marked in NCBI Genbank by Gnomon were mapped to the genomic sequence, and isolated to identify a hypothetical CDS, which was then translated using EMBL EMBOSS Transeq into a hypothetical protein sequence. This was aligned to the X.tropicalis and X.laevis S genes (taf4b and taf4b.S) and confirmed to closely match. The X.laevis L homeolog was re-named to 'taf4bp.L' and 'TATA-box binding protein associated factor 4b pseudogene L homeolog' to reflect its status in v10 annotation as a pseudogene.