XB-FEAT-5924258: Difference between revisions
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=cyp4b1= | =cyp4b1= | ||
This is the community wiki page for the gene ''cyp4b1'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase | This is the community wiki page for the gene ''cyp4b1'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase | ||
=nomenclature changes= | |||
09.02.2021 | |||
On review by Xenbase curators (CJZ), the tandem duplication of “cyp4b1” genes in ''Xenopus tropicalis'' and ''X. laevis'' have been assigned names with sequential numerical suffixes, following nomenclature guidelines. | |||
Notes: | |||
-All genes are on Chromosome 4/4.L and are in the same order left to right. | |||
-''X.laevis.S'' chromosome lacks all 6 copies of the cyp4b1 genes. | |||
Following the human ortholog gene name, the Gene name for '''''cyp4b1''''' changed from '''''cytochrome P450, family 4, subfamily B, polypeptide 1''''' from to '''''cytochrome P450 family 4 subfamily B member 1''''' | |||
Gene name for '''''cyp4b1.2''''' did not need updating | |||
Gene name changed from XB980013 [provisional:cyp4b1] to '''''cyp4b1.3, cytochrome P450 family 4 subfamily B member 1 gene 3''''' | |||
Gene name changed from LOC108714294, cytochrome P450 4B1 to '''''cyp4b1.4, cytochrome P450 family 4 subfamily B member 1 gene 4'''''. Note that this gene did not have a gene page, and a new gene page has been requested. | |||
Gene name changed from XB5810926 [provisional:cyp4b1] to '''''cyp4b1.5, cytochrome P450 family 4 subfamily B member 1 gene 5''''' . See XB-GENEPAGE-5810926 | |||
Gene name changed from XB5864179.L [provisional:cyp4b1] to '''''cyp4b1.6, cytochrome P450 family 4 subfamily B member 1 gene 6''''' . See XB-GENEPAGE-5864179 | |||
=Synteny pattern= | |||
''Xtrop'': mknk1 ... mob3c< … LOC108647460< … atpaf1< ... ccnb1.2> … efcab14< … ''''cyp4b1> … cyp4b1.2> … cyp4b1.3 > … cyp4b1.4> … cyp4b1.5.L> … cyp4b1.6>'''' … pdkk1i< … tal1< | |||
''Xla.L'': mknk1.L ... mob3c.L< ccnb1.2.L> … efcab14.L … Xelaev18023133m> …'''''cyp4b1.L > …cyp4b1.2.L … cyp4b1.3.L > cyp4b1.4.L cyp4b1.5.L> … cyp4b1.6.L'''>'' … pdkk1ip1.L< tal1.L< | |||
''Xla.S'': mknk1.S ... mob3c.S< … atpaf1.S< ... ccnb1.2.S> … efcab14.S< …'''lacks 6 copies of cyp4b1''' pdkk1ip1.S< LOC108715585(lncRNA)> … tal1.S< | |||
Revision as of 10:25, 3 September 2021
cyp4b1
This is the community wiki page for the gene cyp4b1 please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase
nomenclature changes
09.02.2021
On review by Xenbase curators (CJZ), the tandem duplication of “cyp4b1” genes in Xenopus tropicalis and X. laevis have been assigned names with sequential numerical suffixes, following nomenclature guidelines.
Notes:
-All genes are on Chromosome 4/4.L and are in the same order left to right.
-X.laevis.S chromosome lacks all 6 copies of the cyp4b1 genes.
Following the human ortholog gene name, the Gene name for cyp4b1 changed from cytochrome P450, family 4, subfamily B, polypeptide 1 from to cytochrome P450 family 4 subfamily B member 1
Gene name for cyp4b1.2 did not need updating
Gene name changed from XB980013 [provisional:cyp4b1] to cyp4b1.3, cytochrome P450 family 4 subfamily B member 1 gene 3
Gene name changed from LOC108714294, cytochrome P450 4B1 to cyp4b1.4, cytochrome P450 family 4 subfamily B member 1 gene 4. Note that this gene did not have a gene page, and a new gene page has been requested.
Gene name changed from XB5810926 [provisional:cyp4b1] to cyp4b1.5, cytochrome P450 family 4 subfamily B member 1 gene 5 . See XB-GENEPAGE-5810926
Gene name changed from XB5864179.L [provisional:cyp4b1] to cyp4b1.6, cytochrome P450 family 4 subfamily B member 1 gene 6 . See XB-GENEPAGE-5864179
Synteny pattern
Xtrop: mknk1 ... mob3c< … LOC108647460< … atpaf1< ... ccnb1.2> … efcab14< … 'cyp4b1> … cyp4b1.2> … cyp4b1.3 > … cyp4b1.4> … cyp4b1.5.L> … cyp4b1.6>' … pdkk1i< … tal1<
Xla.L: mknk1.L ... mob3c.L< ccnb1.2.L> … efcab14.L … Xelaev18023133m> …cyp4b1.L > …cyp4b1.2.L … cyp4b1.3.L > cyp4b1.4.L cyp4b1.5.L> … cyp4b1.6.L> … pdkk1ip1.L< tal1.L<
Xla.S: mknk1.S ... mob3c.S< … atpaf1.S< ... ccnb1.2.S> … efcab14.S< …lacks 6 copies of cyp4b1 pdkk1ip1.S< LOC108715585(lncRNA)> … tal1.S<