XB-FEAT-22065605: Difference between revisions
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=synteny= | =synteny= | ||
X. laevis sprtn.S on Chromosome 5.S seems to be the true orthology of human SPRTN, with both being flanked by eglin1 and exoc8. | |||
Human chr 1: RNA5SP80< ... EXOC8< ... '''SPRTN'''> ...LOC107985360> ... EGLN1< ...LOC122152336> | Human chr 1: RNA5SP80< ... EXOC8< ... '''SPRTN'''> ...LOC107985360> ... EGLN1< ...LOC122152336> | ||
X. laevis chr5.S: sf3b5.S< ... exoc8.S< ...tsnax.S< ... egln1.S< .. '''sprtn.S'''> ... acta1.S< ... LOC108717893< ... | |||
the 2 other ''X. tropicalis'' genes have been given provisional names ''sprtn2''[geneID: 105945677) and ''sprtn3'' [geneID: 105948375] | the 2 other ''X. tropicalis'' genes have been given provisional names ''sprtn2''[geneID: 105945677) and ''sprtn3'' [geneID: 105948375] | ||
X. trop chr1: jsprp1> ...amh< ...sf3a2< ... plekhj1> ... dot1l> ... ''''''sprtn2''''''> ... ap3d1> ... mob3a> ... mknk2> ... btbd2> ... csnk1g2< ... | |||
X. trop chr9: gng13> ... chtf18< ... rpusd1> ... msin< ... ''''''sprtn3''''''< ... LOC#3326> ... LOC#3470 ... | |||
Revision as of 09:25, 5 January 2023
This is the community wiki page for XB22065605 [provisional:sprtn] - please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase
gene model notes
05JAN2023
Although annotated as a provisional ortholog of SprT-like N-terminal domain (sprtn) in the v9.1 Xtropicalis genome annotation, this model was not included/supported in the v10 annotation.
synteny
X. laevis sprtn.S on Chromosome 5.S seems to be the true orthology of human SPRTN, with both being flanked by eglin1 and exoc8.
Human chr 1: RNA5SP80< ... EXOC8< ... SPRTN> ...LOC107985360> ... EGLN1< ...LOC122152336>
X. laevis chr5.S: sf3b5.S< ... exoc8.S< ...tsnax.S< ... egln1.S< .. sprtn.S> ... acta1.S< ... LOC108717893< ...
the 2 other X. tropicalis genes have been given provisional names sprtn2[geneID: 105945677) and sprtn3 [geneID: 105948375]
X. trop chr1: jsprp1> ...amh< ...sf3a2< ... plekhj1> ... dot1l> ... 'sprtn2'> ... ap3d1> ... mob3a> ... mknk2> ... btbd2> ... csnk1g2< ...
X. trop chr9: gng13> ... chtf18< ... rpusd1> ... msin< ... 'sprtn3'< ... LOC#3326> ... LOC#3470 ...