XB-FEAT-1013836: Difference between revisions
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GALLUS XM_040656636.1[PARTIAL], emu XP_025978297.1 | GALLUS XM_040656636.1[PARTIAL], emu XP_025978297.1 | ||
//'''''inppl1'''''>// | //'''''inppl1'''''>// | ||
chelonia XP_037769744.1 | chelonia XP_037769744.1 | ||
ANAPC15<folr3> folr1> folr2> '''INPPL1'''> PHOX2A< CLPB< STARD10> | ANAPC15<folr3> folr1> folr2> '''INPPL1'''> PHOX2A< CLPB< STARD10> | ||
podarcis XP_028581607.1 | podarcis XP_028581607.1 | ||
LAMTOR1< LOC> ANAPC15< folr> '''INPPL1'''> PHOX2A< CLPB< STARD10> | LAMTOR1< LOC> ANAPC15< folr> '''INPPL1'''> PHOX2A< CLPB< STARD10> | ||
Xtr XP_031753288.1 | Xtr XP_031753288.1 | ||
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LAMTOR1< SFRPX> tomt< FOLR1> '''INPPL1'''> PHOX2A< CLPB< | LAMTOR1< SFRPX> tomt< FOLR1> '''INPPL1'''> PHOX2A< CLPB< | ||
INPPL1> PHOX2A< CLPB< | rana XP_040189969.1 INPPL1> PHOX2A< CLPB< | ||
microcacaelia XP_030055838.1 | microcacaelia XP_030055838.1 | ||
LAMTOR1< LOC> folr> '''INPPL1'''> PHOX2A< CLPB< STARD10> | LAMTOR1< LOC> folr> '''INPPL1'''> PHOX2A< CLPB< STARD10> | ||
D. rerio NP_001034893.1 | D. rerio NP_001034893.1 | ||
Revision as of 10:00, 9 February 2023
inppl1a
This is the community wiki page for the gene inppl1a please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase
nomenlcature changes
09FEB2023
Xenopus gene name for XB-GENEPAGE-1013836 changed from inppl1, inositol polyphosphate phosphatase-like 1 to inppl1a, inositol polyphosphate phosphatase-like 1a
this follows examination of INPPL1 genes in vertebrates.
Most vertebrates groups have two INPPL1 genes but mammals have lost one of them (INPPL1B).
we will creat a new genepage on Xenbase for inppl1b to include Xtr GeneID: 100496685 and Xla.L GeneID: 108698315 . There is no inppl1b.S gene.
synteny patterns for INPPL1A/B in Vertebrates
Source: DAVID WEBB @REFSEQ NCBI
INPPL1 (aka INPPL1A) HUMAN: ANAPC15< FOLR3> FOLR1> FOLR2> INPPL1> PHOX2A< CLPB< PDE2A<
MonDom
ANAPC15<folr3> folr1> folr2> INPPL1> PHOX2A< CLPB< LOC<
echidna XP_038620978.1
LAMTOR1< ANAPC15< LOC< LOC> folr> INPPL1> PHOX2A< CLPB< LOC>
Pheasant XP_031456985
LAMTOR1< LOC> ANAPC15< folr> INPPL1> PHOX2A< CLPB<
GALLUS XM_040656636.1[PARTIAL], emu XP_025978297.1
//inppl1>//
chelonia XP_037769744.1
ANAPC15<folr3> folr1> folr2> INPPL1> PHOX2A< CLPB< STARD10>
podarcis XP_028581607.1
LAMTOR1< LOC> ANAPC15< folr> INPPL1> PHOX2A< CLPB< STARD10>
Xtr XP_031753288.1
LAMTOR1< SFRPX> tomt< FOLR1> INPPL1> PHOX2A< CLPB<
rana XP_040189969.1 INPPL1> PHOX2A< CLPB<
microcacaelia XP_030055838.1
LAMTOR1< LOC> folr> INPPL1> PHOX2A< CLPB< STARD10>
D. rerio NP_001034893.1
SIK3/SIDT2< INPPL1A> PHOX2A< CLPB< LOC< folr< ANAPC15>
INPPL1B
Human, koala
PDZD11> RAB41< ARR3< P2RY4> AWAT1< DGAT2L6< IGBP1<
platypus
PDZD11> stard10-like< RAB41< ARR3< awat1< dgat2l6< IGBP1<
Gallus XP_015133832.2
PDZD11> stard10-like< RAB41< ARR3< "INNPL1"> P2RY4> AWAT1/dgat2< IGBP1<
Pheasant XP_031449847.1, emu XP_025951802.1
PDZD11> stard10-like< RAB41< ARR3< inppl1-like> P2RY4> dgat2< IGBP1<
croc XP_019391783.1[misnamed INPPL1], chelonia XP_043377770.1
PDZD11> stard10-like< RAB41< ARR3< inppl1-like> P2RY4> dgat2< IGBP1<
Xtr XP_031746720.1
stard10-like< RAB41< ARR3< inppl1-like> P2RY4> DGAT2L6< IGBP1<
Rana XP_040190387.1
ARR3< innpl1-like> p2ry4> loc< PDZD11<
microcacaelia XP_030065653.1
RAB41< inppl1-like> IGBP1<
protoperus XP_043913229.1
PDZD11> stard10-like< rab41< ARR3< inppl1-like> p2ry4< p2ry4>
D.rerio INPPL1B NP_001034224.2
ARR3B< INPPL1B > P2RY4> SOX3>