XB-FEAT-6259002: Difference between revisions
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=mig30= | =''mig30''= | ||
This is the community wiki page for the gene ''mig30'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase | This is the community wiki page for the gene ''mig30'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase. | ||
=synteny patterns for Chr1/1L/1S= | |||
Xla v10 Chr1S | |||
aup1.S< LOC#466(il12b-like)> LOC121399253(mmp21-like)< LOC108706464(tlx3)< '''mig30.S<''' pcgf1.S> | |||
Xla v10 Chr1L: | |||
dqx1.L> LOC108704874(mmp21-like)> LOC108704860(TLX3) '''mig30.L<''' pcgf1.L> | |||
''Xtropicalis'' v10 Chr1: | |||
aup1< dqx1> LOC8405(unch)> LOC#3914(il12b-like)> LOC#3912(mmp21-like) tlx2< LOC#8406(rhobtb2-like)> wdr54< c20rf81> rdh11> LOC#8408(unch< nop56>) | |||
Notes: | |||
1) no Xtrop mig30 gene annotated in v10 genome | |||
2) mig30.S and mig30.L are isolated/'orphan' names- nothing else in NCBI are called ''mig30''. = redflag. | |||
3)EggNog homology search (09/03/20230) had the protein for mig30 matching with high confident to KAZALD1, Kazal type serine peptidase inhibitor domain 1 proteins (functionally: insulin-like growth factor binding protein). | |||
4) these X.laevis genes should probably be renamed. Perhaps kazald1-like, as XB has a true ''kazald1'' gene page XB-GENEPAGE-486703 already , where all genes are all on Chr7/7L/7S. | |||
Revision as of 11:46, 10 March 2023
mig30
This is the community wiki page for the gene mig30 please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase.
synteny patterns for Chr1/1L/1S
Xla v10 Chr1S aup1.S< LOC#466(il12b-like)> LOC121399253(mmp21-like)< LOC108706464(tlx3)< mig30.S< pcgf1.S>
Xla v10 Chr1L:
dqx1.L> LOC108704874(mmp21-like)> LOC108704860(TLX3) mig30.L< pcgf1.L>
Xtropicalis v10 Chr1: aup1< dqx1> LOC8405(unch)> LOC#3914(il12b-like)> LOC#3912(mmp21-like) tlx2< LOC#8406(rhobtb2-like)> wdr54< c20rf81> rdh11> LOC#8408(unch< nop56>)
Notes: 1) no Xtrop mig30 gene annotated in v10 genome
2) mig30.S and mig30.L are isolated/'orphan' names- nothing else in NCBI are called mig30. = redflag.
3)EggNog homology search (09/03/20230) had the protein for mig30 matching with high confident to KAZALD1, Kazal type serine peptidase inhibitor domain 1 proteins (functionally: insulin-like growth factor binding protein).
4) these X.laevis genes should probably be renamed. Perhaps kazald1-like, as XB has a true kazald1 gene page XB-GENEPAGE-486703 already , where all genes are all on Chr7/7L/7S.