XB-FEAT-22168636: Difference between revisions
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=Synteny for tgm3-like genes in ''Xenopus''= | =Synteny for tgm3-like genes in ''Xenopus''= | ||
These are the gene patterns in eth v10 gene ome assemblies, assesed here to help name unnamed/LOC# genes. | |||
The gene highlighted in bold are syntenic and will be | The gene tgm-family highlighted in bold are syntenic, are therefore considered paralogs/orthologs and will be given the same gene symbol/name ie '''''tgm7 and tgm3l.2''''' | ||
XtropChr10: ''tgm5< '''tgm7<''' tgm3l.8< tgm3l.7< bpil< LOC8073:lbpl, tgm3l.1> '''tgm3l.2>''' tgm6< tgm3l.4> tgm3l.5> LOC5776:bpifb4< LOC3875:ccdc77l> LOC8000:ccdc77lp> bpifb2< dnttip1> rundc1< ifi35>'' | XtropChr10: ''tgm5< '''tgm7<''' tgm3l.8< tgm3l.7< bpil< LOC8073:lbpl, tgm3l.1> '''tgm3l.2>''' tgm6< tgm3l.4> tgm3l.5> LOC5776:bpifb4< LOC3875:ccdc77l> LOC8000:ccdc77lp> bpifb2< dnttip1> rundc1< ifi35>'' | ||
Revision as of 07:48, 20 April 2023
tgm3l.2
This is the community wiki page for teh Xenopus genes "tgm3l.2". Please record here any information about these genes that is not recorded elsewhere on Xenbase.
Synteny for tgm3-like genes in Xenopus
These are the gene patterns in eth v10 gene ome assemblies, assesed here to help name unnamed/LOC# genes.
The gene tgm-family highlighted in bold are syntenic, are therefore considered paralogs/orthologs and will be given the same gene symbol/name ie tgm7 and tgm3l.2
XtropChr10: tgm5< tgm7< tgm3l.8< tgm3l.7< bpil< LOC8073:lbpl, tgm3l.1> tgm3l.2> tgm6< tgm3l.4> tgm3l.5> LOC5776:bpifb4< LOC3875:ccdc77l> LOC8000:ccdc77lp> bpifb2< dnttip1> rundc1< ifi35>
Xla.9_10L[rv]: tgm5< tgm7< tgm3l.8< tgm3l.7< tgm3l.6< tgm3l.4< tgm3l.3> LOC0174:'tgm3'> tgm3l.1< bpil< LOC1793;bpifb2l LOC8190:bpifb4 pcif1< pltp>
Xla.9_10S[rv]: tgm5< LOC9019:'tgm3l'< tgm3l.8< tgm3l.7< tgm3.4< LOC2739:pknsl> bpil< LOC9081:bpifb2l pcif1< pltp>