XB-FEAT-5995511: Difference between revisions
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''Xenopus'' scrt1 genes are on Chr6/6L/6S | ''Xenopus'' scrt1 genes are on Chr6/6L/6S, flanked by dgat1 and fbxl6. | ||
Human chr8 [Gene ID]: 83482: DGAT1... '''SCRT1'''.... TME249.... FBXL6 | Human chr8 [Gene ID]: 83482: DGAT1... '''SCRT1'''.... TME249.... FBXL6 | ||
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Xtrop chr6: [GeneID:100486069]: dgat1 ...LOC(tbc1d20) ... loc(cytb11b) ...'''scrt1''' ... fbxl6 ... slc52a1 | Xtrop chr6: [GeneID:100486069]: dgat1 ...LOC(tbc1d20) ... loc(cytb11b) ...'''scrt1''' ... fbxl6 ... slc52a1 | ||
Xla.Chr6S: nuggc.S | Xla.Chr6S: nuggc.S ... LOC(mfsd3)... slc39a4... LOC(cpsf1)... ''scrt1.S'' | ||
''Xenopus'' scrt2 is on chr10/9_10L/9_10S | ''Xenopus'' scrt2 is on chr10/9_10L/9_10S flanked by tcf15, srcn1 and slc52a3. | ||
XlaChr9_10S: ... tcf15... srxn1... scrt2... slc52a3... | XlaChr9_10S: ... tcf15... srxn1... '''''scrt2'''''... slc52a3... | ||
Human Chr20: ...TCF15...SRXN1... SCRT2... SLC52A3.. | Human Chr20: ...TCF15...SRXN1... '''SCRT2'''... SLC52A3.. | ||
A new gene page for Xenopus 'scrt2' will be built for LOC116407977 scratch family transcriptional repressor 2 Gene ID: 108695492 | A new gene page for Xenopus 'scrt2' will be built for LOC116407977 scratch family transcriptional repressor 2 Gene ID: 108695492 | ||
Revision as of 06:25, 29 April 2023
scrt1
This is the community wiki page for the gene scrt1 please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase.
nomenclature changes
27APRIL2023
this gene was misidentified as scrt2, AND IS RENAMED HERE AS SCRT1.
Synteny supports it as the true ortholog of human SCRT1:
Xenopus scrt1 genes are on Chr6/6L/6S, flanked by dgat1 and fbxl6.
Human chr8 [Gene ID]: 83482: DGAT1... SCRT1.... TME249.... FBXL6
Xtrop chr6: [GeneID:100486069]: dgat1 ...LOC(tbc1d20) ... loc(cytb11b) ...scrt1 ... fbxl6 ... slc52a1
Xla.Chr6S: nuggc.S ... LOC(mfsd3)... slc39a4... LOC(cpsf1)... scrt1.S
Xenopus scrt2 is on chr10/9_10L/9_10S flanked by tcf15, srcn1 and slc52a3.
XlaChr9_10S: ... tcf15... srxn1... scrt2... slc52a3... Human Chr20: ...TCF15...SRXN1... SCRT2... SLC52A3..
A new gene page for Xenopus 'scrt2' will be built for LOC116407977 scratch family transcriptional repressor 2 Gene ID: 108695492